General Data Analysis Skills Index

General Data Analysis Skills Index is a skill for Claude Code, Codex from aristoteleo/PantheonOS. It costs 28 tokens per session (326 once invoked), scanned A, original, BSD-2-Clause.

An index of general data-analysis skills for organizing workspaces, managing software environments, improving performance, and transferring data to high-performance computers.

In plain words
What is it for?
Use it to structure analysis folders, set up Python environments, use multiple CPU cores or GPUs, optimize memory and speed, and move large datasets through SSH.
Why use it?
It addresses common infrastructure problems that make analyses difficult to reproduce, slow to run, or hard to maintain.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/aristoteleo/pantheonos/general_data_analysis
Any agent
npx skills add aristoteleo/PantheonOS --skill general_data_analysis
Clone the repo
git clone --depth 1 https://github.com/aristoteleo/PantheonOS

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for General Data Analysis Skills Index

README.md
[![agentmods](https://agentmods.dev/badge/skills/aristoteleo/pantheonos/general_data_analysis.svg)](https://agentmods.dev/skills/aristoteleo/pantheonos/general_data_analysis)
Your own site
<a href="https://agentmods.dev/skills/aristoteleo/pantheonos/general_data_analysis"><img src="https://agentmods.dev/badge/skills/aristoteleo/pantheonos/general_data_analysis.svg" alt="Measured on agentmods" height="20"></a>
Per session 28 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 326 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00028 $0.00326
Opus 5 $0.00014 $0.00163
Sonnet 5 $0.00006 $0.00065
Haiku 4.5 $0.00003 $0.00033

Measured 6d ago against content hash 9eaa3aa9ee08, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

General Data Analysis Skills Index scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

pantheon/factory/templates/skills/omics/general_data_analysis/SKILL.md · 50 lines

What it actually says

General Data Analysis Skills

Cross-cutting skills for workspace hygiene, environment setup, and computational performance.

Available Skills

Workspace File Organization

Give every analysis task its own descriptively-named folder (notebook, figures, data, reports inside it) — never scatter files at the workspace root or dump figures into internal dirs.

Skill file: file_organization.md

Environment Management

Detect and configure the best available environment manager (Conda/Mamba/venv) for reproducible Python environments.

Skill file: environment_management.md

Parallel Computing & Performance

Multi-core CPU, GPU acceleration, and memory optimization strategies for large-scale data analysis.

Skill file: parallel_computing.md

HPC Data Transfer via SSH

Transfer data to/from HPC clusters with interactive authentication (password + Duo/MFA) using pexpect and SSH ControlMaster.

Skill file: hpc_data_transfer.md

When to use:

  • Downloading data from Stanford Sherlock or similar HPC clusters
  • Need to handle Duo two-factor authentication programmatically
  • Bulk data transfer with rsync over persistent SSH connections
Files

What ships with it

4 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 50 lines · 28 tokens per session scan A 9eaa3aa9ee08

Subscribe to this mod's changes

General Data Analysis Skills Index is a skill published in the GitHub repository aristoteleo/PantheonOS (482 stars, last pushed 3d ago), licensed BSD-2-Clause. It adds 28 tokens to every session and 326 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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