singlecell skills

55 tagged singlecell, measured the same way as everything else here.

Browse within: knowledge-graph 31bioinformatics 30scrna 28llm-agent 27agent 25multi-agents 25pantheonos 25spatial-transcriptomics 24multi-omics 21Single-Cell 15

aristoteleo/PantheonOS

Skill Claude CodeCodex

Panel design for DEVELOPING / dynamic systems (embryonic organs, differentiation, regeneration). The target experiment is usually a LATE / terminal stage, but the biology is a trajectory: terminal cell types are end-products of earlier lineage programs. A panel built from the target stage alone resolves terminal…

not rated 490 +2 yesterday A SkillSpector: pass 129 tokens original BSD-2-Clause

sc-cell-annotation

02

TianGzlab/OmicsClaw

Skill Claude CodeCodex

Load when assigning cell-type labels to a clustered scRNA AnnData via marker dictionaries, CellTypist, PopV, KNNPredict, SingleR, scmap, SCSA, or a manual cluster-to-label map. Skip when ranking marker genes per cluster (use sc-markers); condition-vs-control DE (use sc-de).

not rated 161 changed 10d ago A SkillSpector: warn 73 tokens original Apache-2.0

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