59 tagged Single-Cell, measured the same way as everything else here.
Browse within: bioinformatics 95multi-omics 48knowledge-graph 47llm-agent 47multi-agents 47bulk-rna-seq 31omics 31singlecell 15scrna 13deconvolution 11machine-learning 10bulkrna 9cell-communication 9genomics 7
Skill Claude CodeCodex
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, and integrate with scanpy/PyTorch for population-scale single-cell analysis. Use this skill when: (1) Querying single-cell expression data by cell type, tissue, or disease, (2) Exploring available single-cell datasets…
Skill Claude CodeCodex
Use for any task involving the decoupler library — inferring biological activity/enrichment scores from omics data (bulk, single-cell, spatial). Triggers on estimating transcription factor (TF) activity, pathway activity, or gene-set enrichment from an AnnData/DataFrame; running ulm, mlm, ora, gsea, gsva, aucell…
Skill Claude CodeCodex
Single-cell analysis pipeline covering scRNA-seq, snRNA-seq, and CyTOF (mass cytometry) — QC, normalization, integration, clustering, annotation, differential expression, trajectory, cell communication, and TF activity inference.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: