Paper Writing Workflow

Paper Writing Workflow is a skill for Claude Code, Codex from aristoteleo/PantheonOS. It costs 58 tokens per session (1,924 once invoked), scanned A, original, BSD-2-Clause.

A staged workflow for writing research papers and similar academic documents. It covers tasks such as organizing source material, defining the research question, planning figures, testing the draft with readers, and finalizing files.

In plain words
What is it for?
Use it to plan and complete papers, reports, grants, literature reviews, data summaries, figure plans, and final submission packages.
Why use it?
It prevents important writing tasks from being done in the wrong order or without the material needed to support them.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/aristoteleo/pantheonos/workflow
Any agent
npx skills add aristoteleo/PantheonOS --skill workflow
Clone the repo
git clone --depth 1 https://github.com/aristoteleo/PantheonOS

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for Paper Writing Workflow

README.md
[![agentmods](https://agentmods.dev/badge/skills/aristoteleo/pantheonos/workflow.svg)](https://agentmods.dev/skills/aristoteleo/pantheonos/workflow)
Your own site
<a href="https://agentmods.dev/skills/aristoteleo/pantheonos/workflow"><img src="https://agentmods.dev/badge/skills/aristoteleo/pantheonos/workflow.svg" alt="Measured on agentmods" height="20"></a>
Per session 58 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,924 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00058 $0.01924
Opus 5 $0.00029 $0.00962
Sonnet 5 $0.00012 $0.00385
Haiku 4.5 $0.00006 $0.00192

Measured 6d ago against content hash 7b51c3c50734, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

Paper Writing Workflow scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

pantheon/factory/templates/skills/paper_writing/workflow/SKILL.md · 254 lines

How it starts

The opening of the file, as written. The whole thing — 254 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Paper Writing Workflow

Workflow phases decide the order of work. They do not provide final prose style or visual themes. Use only the phases relevant to the current scenario; not every task needs every phase.

Phase When to run Output file
1. Triage every task; whenever user intent changes {workdir}/triage.md
2. Material inventory user supplied files, notes, data, figures, comments {workdir}/materials/inventory.md
3. Research question early papers, grants, vague topics; before outline {workdir}/research_question.md
4. Literature review claims need citation grounding or novelty positioning {workdir}/literature_matrix.md
5. Paper outline before drafting any full manuscript, grant, or report {workdir}/outline.md
6. Data analysis summary user provides result tables, plots, statistics, experiment notes {workdir}/results_table.md
7. Figure storyline figures/tables carry the core story {workdir}/figures_plan.md
8. Reader testing before finalizing high-stakes documents or after major rewrites {workdir}/reader_test.md
9. Finalize packet before ending a full task {workdir}/final_state.md

Phases tied to a single scenario live in that scenario file:


1. Triage

Use at the start of every paper-writing task and whenever user intent changes.

Output

Create or update triage.md:

scenario_id: paper_submission
format_id: journal_article
theme_id: editable_article
mode: report              # report (default) | submission — see Mode section in SKILL.md
language: zh
audience: reviewers
source_materials:
  - materials/inventory.md
output:
  markdown_source: draft/paper.md
  html_path: report/paper_preview.html
  editable_html: true
  pdf: true
  docx: false
  latex: false
constraints:
  venue_profile: null
  page_size: A4
  word_limits: null
quality_gates:
  - manuscript_coverage
  - format_lint
  - reproducibility
  - html_editability_check
  # submission mode only:
  # - claim_evidence_check
  # - reviewer_rubric
  # - reporting_guideline_check  (clinical only)

Read the full file on GitHub · 254 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 254 lines · 58 tokens per session scan A 7b51c3c50734

Subscribe to this mod's changes

Paper Writing Workflow is a skill published in the GitHub repository aristoteleo/PantheonOS (482 stars, last pushed 3d ago), licensed BSD-2-Clause. It adds 58 tokens to every session and 1,924 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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