research-biomedical-databases

research-biomedical-databases is a skill for Claude Code, Codex from aws-samples/amazon-bedrock-agents-healthcare-lifesciences. It costs 89 tokens per session (2,839 once invoked), scanned A, original, MIT-0.

A tool for querying biomedical databases such as UniProt for protein information, ClinVar for genetic variants, and PDB for 3D protein structures.

In plain words
What is it for?
It helps find protein details, interpret genetic variants, study biological pathways, connect drugs with targets, and add genomic annotations.
Why use it?
It brings several specialist biology databases into one way of searching, reducing the need to look up each source separately.

Skill for Claude CodeCodex ✓ vendor

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit It helps find protein details, interpret genetic variants, study biological pathways, connect drugs with targets, and add genomic annotations.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/research-biomedical-databases
About the project

Healthcare and Life Sciences Agents Toolkit is an AWS library of domain-specific AI capabilities for healthcare and life sciences workflows, including reference agents, reusable skills, and MCP tools. Builders, researchers, clinicians, scientists, and platform teams use it for tasks such as drug research, clinical trials, genomics, and commercialization. The catalogue add-ons expose parts of the toolkit as portable skills and MCP tools for coding assistants and other platforms.

aws-samples/amazon-bedrock-agents-healthcare-lifesciences · 275 stars · on GitHub

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add aws-samples/amazon-bedrock-agents-healthcare-lifesciences --skill research-biomedical-databases
Clone the repo
git clone --depth 1 https://github.com/aws-samples/amazon-bedrock-agents-healthcare-lifesciences

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for research-biomedical-databases

README.md
[![agentmods](https://agentmods.dev/badge/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/research-biomedical-databases/github.svg)](https://agentmods.dev/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/research-biomedical-databases)
Your own site
<a href="https://agentmods.dev/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/research-biomedical-databases"><img src="https://agentmods.dev/badge/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/research-biomedical-databases/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for research-biomedical-databases

Your own site · 80×15
<a href="https://agentmods.dev/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/research-biomedical-databases"><img src="https://agentmods.dev/badge/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/research-biomedical-databases.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 89 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,839 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00089 $0.02839
Opus 5.5 $0.00036 $0.01136
Sonnet 5.5 $0.00018 $0.00568
Haiku 4.5 $0.00009 $0.00284

Measured 2mo ago against content hash 21287ffe21ef, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

research-biomedical-databases scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

The scan reads SKILL.md. This mod also ships 1 executable file (tests/test_skill.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/research-biomedical-databases/SKILL.md · 162 lines

The source is not reproduced here

Licensed MIT-0

The repository is licensed MIT-0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.

Read it on GitHub

Files

What ships with it

6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 162 lines · 89 tokens per session scan A 21287ffe21ef

Subscribe to this mod's changes

research-biomedical-databases is a skill published in the GitHub repository aws-samples/amazon-bedrock-agents-healthcare-lifesciences (275 stars, last pushed 8d ago), licensed MIT-0. It adds 89 tokens to every session and 2,839 once invoked, about $0.0004 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

research-biomedical-databases compared with skills from other repositories

research-biomedical-databases next to 6 skills from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
research-biomedical-databasesaws-samples/amazon-bedrock-agents-healthcare-lifesciencesSkill2758d agoMIT-0A89Claude Code, Codex
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exploratory-data-analysisK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA83Claude Code
matlabK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA44Claude Code
phylogeneticsK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA71Claude Code, Codex
research-engineerdavila7/claude-code-templatesSkill33ktodayMITA43Claude Code, Codex
mapping-to-snomedmaziyarpanahi/openmedSkill5.8kyesterdayApache-2.0A205Claude Code