batch_integration_advisor

Advice for combining batches of biological data before analysis. Batch integration means reducing unwanted differences caused by how or when samples were processed, while preserving real biological differences.

In plain words
What is it for?
Use it when planning or reviewing batch correction and integration for biological datasets.
Why use it?
It helps choose an integration approach by considering the tradeoff between removing technical effects and keeping meaningful biology.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/azealoo/miniagent/batch_integration_advisor
Any agent
npx skills add Azealoo/miniAgent --skill batch_integration_advisor
Clone the repo
git clone --depth 1 https://github.com/Azealoo/miniAgent

Made for: Claude Code, Codex.

Per session 25 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 439 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00025 $0.00439
Opus 5 $0.00013 $0.00219
Sonnet 5 $0.00005 $0.00088
Haiku 4.5 $0.00003 $0.00044

Measured yesterday against content hash 744f481c34f1, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

batch_integration_advisor scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

backend/skills/batch_integration_advisor/SKILL.md · 59 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday First seen · 59 lines · 25 tokens per session scan A 744f481c34f1

Subscribe to this mod's changes

batch_integration_advisor is a skill published in the GitHub repository Azealoo/miniAgent (2 stars, last pushed 2mo ago), with no licence file. It adds 25 tokens to every session and 439 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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