bioconductor-epialleler

bioconductor-epialleler is a skill for Claude Code from bioMate-AI/biomate-bioconductor-kb. It costs 0 tokens per session (1,765 once invoked), scanned A, original, no licence file.

An R package for finding inherited DNA methylation patterns, called epialleles, in next-generation sequencing data. DNA methylation is a chemical mark that can affect how genes are used.

In plain words
What is it for?
Use it to call cytosine methylation and measure the frequency of hypermethylated epialleles in sequencing results.
Why use it?
It helps identify and report methylation patterns that occur repeatedly across cell or organism generations, including patterns concentrated in genomic regions or individual DNA positions.

Skill for Claude Code

Written for Claude Code: user-invocable in frontmatter.

Good fit Use it to call cytosine methylation and measure the frequency of hypermethylated epialleles in sequencing results.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/biomate-ai/biomate-bioconductor-kb/epialleler
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add bioMate-AI/biomate-bioconductor-kb --skill epialleler
Clone the repo
git clone --depth 1 https://github.com/bioMate-AI/biomate-bioconductor-kb

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bioconductor-epialleler

README.md
[![agentmods](https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/epialleler/github.svg)](https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/epialleler)
Your own site
<a href="https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/epialleler"><img src="https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/epialleler/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bioconductor-epialleler

Your own site · 80×15
<a href="https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/epialleler"><img src="https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/epialleler.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 0 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,765 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00000 $0.01765
Opus 5.5 $0.00000 $0.00706
Sonnet 5.5 $0.00000 $0.00353
Haiku 4.5 $0.00000 $0.00177

Measured 2mo ago against content hash f268e929eeb3, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

bioconductor-epialleler scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/genomics/epialleler/SKILL.md · 140 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 140 lines · 0 tokens per session scan A f268e929eeb3

Subscribe to this mod's changes

bioconductor-epialleler is a skill published in the GitHub repository bioMate-AI/biomate-bioconductor-kb (792 stars, last pushed 4mo ago), with no licence file. It costs nothing until one of its globs matches a file; then it loads 1,765 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

bioconductor-epialleler compared with skills from other repositories

bioconductor-epialleler next to 6 skills from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
bioconductor-epiallelerbioMate-AI/biomate-bioconductor-kbSkill7924mo agononeA0Claude Code
instrument-data-to-allotropeanthropics/knowledge-work-pluginsSkill35k2d agoApache-2.0A123Claude Code
exploratory-data-analysisK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA83Claude Code
matlabK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA44Claude Code
phylogeneticsK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA71Claude Code, Codex
research-engineerdavila7/claude-code-templatesSkill33kyesterdayMITA43Claude Code, Codex
mapping-to-snomedmaziyarpanahi/openmedSkill5.8kyesterdayApache-2.0A205Claude Code