bioconductor-msbackendmassbank

bioconductor-msbackendmassbank is a skill for Claude Code from bioMate-AI/biomate-bioconductor-kb. It costs 0 tokens per session (943 once invoked), scanned A, original, no licence file.

A data connector for importing and exporting MS/MS library spectra from MassBank files or MassBank databases. MS/MS spectra are measurements used to help identify chemical compounds.

In plain words
What is it for?
Use it to read and write MassBank spectral records and connect analyses to MassBank data.
Why use it?
It lets mass spectrometry workflows exchange library spectra without manually converting each record.

Skill for Claude Code

Written for Claude Code: user-invocable in frontmatter.

Good fit Use it to read and write MassBank spectral records and connect analyses to MassBank data.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/biomate-ai/biomate-bioconductor-kb/msbackendmassbank
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add bioMate-AI/biomate-bioconductor-kb --skill msbackendmassbank
Clone the repo
git clone --depth 1 https://github.com/bioMate-AI/biomate-bioconductor-kb

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bioconductor-msbackendmassbank

README.md
[![agentmods](https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/msbackendmassbank/github.svg)](https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/msbackendmassbank)
Your own site
<a href="https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/msbackendmassbank"><img src="https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/msbackendmassbank/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bioconductor-msbackendmassbank

Your own site · 80×15
<a href="https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/msbackendmassbank"><img src="https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/msbackendmassbank.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 0 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 943 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00000 $0.00943
Opus 5.5 $0.00000 $0.00377
Sonnet 5.5 $0.00000 $0.00189
Haiku 4.5 $0.00000 $0.00094

Measured 2mo ago against content hash 0fa97623efae, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

bioconductor-msbackendmassbank scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/proteomics/msbackendmassbank/SKILL.md · 63 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 63 lines · 0 tokens per session scan A 0fa97623efae

Subscribe to this mod's changes

bioconductor-msbackendmassbank is a skill published in the GitHub repository bioMate-AI/biomate-bioconductor-kb (792 stars, last pushed 4mo ago), with no licence file. It costs nothing until one of its globs matches a file; then it loads 943 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

Related

bioconductor-msbackendmassbank compared with skills from other repositories

bioconductor-msbackendmassbank next to 6 skills from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
bioconductor-msbackendmassbankbioMate-AI/biomate-bioconductor-kbSkill7924mo agononeA0Claude Code
tiledbvcfK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA62Claude Code, Codex
lamindbK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA58Claude Code, Codex
defining-cohort-phenotypesmaziyarpanahi/openmedSkill5.8kyesterdayApache-2.0A191Claude Code
benchling-integrationsynthetic-sciences/openscienceSkill4.3k2d agoApache-2.0A44Claude Code, Codex
chembl-databasegoogle-deepmind/science-skillsSkill3.4k14d agoApache-2.0A53Claude Code, Codex
nvalchemi-data-storageNVIDIA/nvalchemi-toolkitSkill204yesterdayApache-2.0A90Claude Code