bioconductor-rtracklayer

bioconductor-rtracklayer is a skill for Claude Code from bioMate-AI/biomate-bioconductor-kb. It costs 62 tokens per session (1,238 once invoked), scanned A, original, no licence file.

A toolkit for working with genome browsers and genomic annotation tracks. It reads, edits, imports, and exports formats such as GFF, BED, WIG, BigWig, and 2bit.

In plain words
What is it for?
It helps researchers exchange genomic tracks with genome browsers and manipulate annotation files in R.
Why use it?
It removes the need to write separate format-handling code for each type of genome data.

Skill for Claude Code

Written for Claude Code: user-invocable in frontmatter.

Good fit It helps researchers exchange genomic tracks with genome browsers and manipulate annotation files in R.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/biomate-ai/biomate-bioconductor-kb/rtracklayer
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add bioMate-AI/biomate-bioconductor-kb --skill rtracklayer
Clone the repo
git clone --depth 1 https://github.com/bioMate-AI/biomate-bioconductor-kb

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bioconductor-rtracklayer

README.md
[![agentmods](https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/rtracklayer/github.svg)](https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/rtracklayer)
Your own site
<a href="https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/rtracklayer"><img src="https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/rtracklayer/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bioconductor-rtracklayer

Your own site · 80×15
<a href="https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/rtracklayer"><img src="https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/rtracklayer.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 62 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,238 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00062 $0.01238
Opus 5 $0.00031 $0.00619
Sonnet 5 $0.00012 $0.00248
Haiku 4.5 $0.00006 $0.00124

Measured 9d ago against content hash 2f6a269855b2, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

bioconductor-rtracklayer scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

- **Imports:** XML, BiocGenerics, S4Vectors, IRanges, XVector, Seqinfo, Biostrings, curl, httr, Rsamtools, GenomicAlignments, BiocIO, restfulr
skills/genomics/rtracklayer/SKILL.md · 72 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 72 lines · 62 tokens per session scan A 2f6a269855b2

Subscribe to this mod's changes

bioconductor-rtracklayer is a skill published in the GitHub repository bioMate-AI/biomate-bioconductor-kb (808 stars, last pushed 2mo ago), with no licence file. It adds 62 tokens to every session and 1,238 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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