bioconductor-siggenes

bioconductor-siggenes is a skill for Claude Code from bioMate-AI/biomate-bioconductor-kb. It costs 51 tokens per session (1,439 once invoked), scanned A, original, no licence file.

A tool for finding genes that are expressed differently between groups of biological samples. It also estimates the false discovery rate, which is the expected share of reported findings that may be false positives.

In plain words
What is it for?
Use it to compare gene activity between sample groups and estimate the reliability of the differences found.
Why use it?
It helps researchers identify meaningful gene differences while accounting for the risk of finding changes by chance.

Skill for Claude Code

Written for Claude Code: user-invocable in frontmatter.

Good fit Use it to compare gene activity between sample groups and estimate the reliability of the differences found.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/biomate-ai/biomate-bioconductor-kb/siggenes
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add bioMate-AI/biomate-bioconductor-kb --skill siggenes
Clone the repo
git clone --depth 1 https://github.com/bioMate-AI/biomate-bioconductor-kb

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bioconductor-siggenes

README.md
[![agentmods](https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/siggenes/github.svg)](https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/siggenes)
Your own site
<a href="https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/siggenes"><img src="https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/siggenes/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bioconductor-siggenes

Your own site · 80×15
<a href="https://agentmods.dev/skills/biomate-ai/biomate-bioconductor-kb/siggenes"><img src="https://agentmods.dev/badge/skills/biomate-ai/biomate-bioconductor-kb/siggenes.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 51 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,439 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00051 $0.01439
Opus 5 $0.00026 $0.00720
Sonnet 5 $0.00010 $0.00288
Haiku 4.5 $0.00005 $0.00144

Measured 9d ago against content hash d31e29c7134c, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

bioconductor-siggenes scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/transcriptomics/siggenes/SKILL.md · 75 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 75 lines · 51 tokens per session scan A d31e29c7134c

Subscribe to this mod's changes

bioconductor-siggenes is a skill published in the GitHub repository bioMate-AI/biomate-bioconductor-kb (808 stars, last pushed 2mo ago), with no licence file. It adds 51 tokens to every session and 1,439 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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