protein-design-workflow

protein-design-workflow is a skill for Claude Code, Codex from BioTender-max/ProteinClaw. It costs 66 tokens per session (1,038 once invoked), scanned A, original, no licence file.

Guidance for planning and carrying out a complete protein-design project, from choosing a starting approach through combining design tools. It also covers computing needs and expected project timing.

In plain words
What is it for?
Use it when starting a project, planning the steps, integrating several design programs, or estimating computing resources and timelines.
Why use it?
It helps turn separate protein-design tools into an ordered workflow and clarifies what is needed at each stage.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it when starting a project, planning the steps, integrating several design programs, or estimating computing resources and timelines.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/biotender-max/proteinclaw/protein-design-workflow
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add BioTender-max/ProteinClaw --skill protein-design-workflow
Clone the repo
git clone --depth 1 https://github.com/BioTender-max/ProteinClaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for protein-design-workflow

README.md
[![agentmods](https://agentmods.dev/badge/skills/biotender-max/proteinclaw/protein-design-workflow/github.svg)](https://agentmods.dev/skills/biotender-max/proteinclaw/protein-design-workflow)
Your own site
<a href="https://agentmods.dev/skills/biotender-max/proteinclaw/protein-design-workflow"><img src="https://agentmods.dev/badge/skills/biotender-max/proteinclaw/protein-design-workflow/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for protein-design-workflow

Your own site · 80×15
<a href="https://agentmods.dev/skills/biotender-max/proteinclaw/protein-design-workflow"><img src="https://agentmods.dev/badge/skills/biotender-max/proteinclaw/protein-design-workflow.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 66 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,038 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00066 $0.01038
Opus 5 $0.00033 $0.00519
Sonnet 5 $0.00013 $0.00208
Haiku 4.5 $0.00007 $0.00104

Measured 10d ago against content hash 50b7f8f75a50, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

protein-design-workflow scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

curl -o target.pdb "https://files.rcsb.org/download/XXXX.pdb"
skills/protein-design-workflow/SKILL.md · 143 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 10d ago First seen · 143 lines · 66 tokens per session scan A 50b7f8f75a50

Subscribe to this mod's changes

protein-design-workflow is a skill published in the GitHub repository BioTender-max/ProteinClaw (11 stars, last pushed 6mo ago), with no licence file. It adds 66 tokens to every session and 1,038 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

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protein-design-workflow

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End-to-end guidance for protein design pipelines. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Planning compute resources and timelines, (5) Integrating multiple design tools. For tool selection, use…

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