ovito-evidence-postprocessing

ovito-evidence-postprocessing is a skill for Codex from Cai-aa/CAE-Agent-Hub. It costs 84 tokens per session (385 once invoked), scanned A, original, MIT.

A workflow guide for using OVITO, a tool that inspects and renders atom-level simulation data from LAMMPS and other particle files. It covers building visual pipelines and exporting images, animations, tables, and state files.

In plain words
What is it for?
Use it to inspect molecular-dynamics trajectories, visualize strain or defects, create publication images and animations, export numeric tables, and document the settings used.
Why use it?
It helps keep postprocessing choices traceable, such as modifiers, colors, camera settings, and scalar ranges. It also makes clear that a rendered result does not prove the original simulation was physically correct.

Skill for Codex

Written for Codex: agents/openai.yaml present. Also seen: mentions Codex.

Good fit Use it to inspect molecular-dynamics trajectories, visualize strain or defects, create publication images and animations, export numeric tables, and document the settings used.

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Install with agentmods
npx agentmods add skills/cai-aa/cae-agent-hub/ovito-evidence-postprocessing
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Cai-aa/CAE-Agent-Hub --skill ovito-evidence-postprocessing
Clone the repo
git clone --depth 1 https://github.com/Cai-aa/CAE-Agent-Hub

Made for: Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for ovito-evidence-postprocessing

README.md
[![agentmods](https://agentmods.dev/badge/skills/cai-aa/cae-agent-hub/ovito-evidence-postprocessing.svg)](https://agentmods.dev/skills/cai-aa/cae-agent-hub/ovito-evidence-postprocessing)
Your own site
<a href="https://agentmods.dev/skills/cai-aa/cae-agent-hub/ovito-evidence-postprocessing"><img src="https://agentmods.dev/badge/skills/cai-aa/cae-agent-hub/ovito-evidence-postprocessing.svg" alt="Measured on agentmods" height="20"></a>
Per session 84 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 385 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00084 $0.00385
Opus 5 $0.00042 $0.00192
Sonnet 5 $0.00017 $0.00077
Haiku 4.5 $0.00008 $0.00038

Measured 8d ago against content hash cdf03169d6fe, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-07, from the pricing page.

Security

Grade A, and why

ovito-evidence-postprocessing scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Skill/ovito/ovito-evidence-postprocessing/SKILL.md · 40 lines

What it actually says

OVITO Evidence Postprocessing

OVITO explains and renders atomistic data; it does not prove that the upstream simulation was physically correct.

Start

ai-cae-toolbox context-scope --solver ovito
ai-cae-toolbox bridge-plan --solver ovito --objective "<objective>"
ai-cae-toolbox create-run --solver ovito --case <case-name> --objective "<objective>"
ai-cae-toolbox write-smoke-template --solver ovito --run-dir <run-dir>

Use ovito_check_installation before scripting. OVITO Basic may include ovito.exe but not ovitos; configure a compatible external Python with the OVITO package when batch scripting is required.

Build the Pipeline

Record input trajectory, frame range, particle properties, modifiers and their parameters, selection/deletion rules, color mapping, clipping plane, camera, render size, background, and export interval.

For strain or defect visualizations, record the reference configuration, neighbor cutoff, crystal structure, and modifier assumptions. Read references/render-evidence.md.

Finish

Export the pipeline script, PNG/MP4, numeric table when available, and a short caption defining every color and scalar range. State whether the output came from OVITO, a compatible Python implementation, or another plotting library. Never label a substitute plot as native OVITO output.

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 8d ago First seen · 40 lines · 84 tokens per session scan A cdf03169d6fe

Subscribe to this mod's changes

ovito-evidence-postprocessing is a skill published in the GitHub repository Cai-aa/CAE-Agent-Hub (852 stars, last pushed yesterday), licensed MIT. It adds 84 tokens to every session and 385 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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