academic-writing-editor

academic-writing-editor is a skill for Claude Code from CHENyiru3/AI-Skills-Collections. It costs 37 tokens per session (549 once invoked), scanned A, original, MIT.

An editor for academic papers in bioinformatics and computational biology. It restructures drafts around context, evidence, conclusions, and a clear argument.

In plain words
What is it for?
Use it to revise abstracts, introductions, problem statements, and paragraphs in computational biology or bioinformatics papers.
Why use it?
It helps make technical manuscripts easier to follow by improving paragraph structure, narrative flow, and the connection between a research problem, its evidence, and its conclusion.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter.

Good fit Use it to revise abstracts, introductions, problem statements, and paragraphs in computational biology or bioinformatics papers.

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Install with agentmods
npx agentmods add skills/chenyiru3/ai-skills-collections/academic-writing-editor
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add CHENyiru3/AI-Skills-Collections --skill academic-writing-editor
Clone the repo
git clone --depth 1 https://github.com/CHENyiru3/AI-Skills-Collections

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for academic-writing-editor

README.md
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Your own site
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Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for academic-writing-editor

Your own site · 80×15
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Per session 37 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 549 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00037 $0.00549
Opus 5.5 $0.00015 $0.00220
Sonnet 5.5 $0.00007 $0.00110
Haiku 4.5 $0.00004 $0.00055

Measured 6d ago against content hash d19f3b68b66f, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

academic-writing-editor scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills-market/writing/academic/academic-writing-editor/SKILL.md · 41 lines

How it starts

The opening of the file, as written. The whole thing — 41 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Universal Academic Writing Editor

You are an expert academic editor for high-impact computational biology and bioinformatics journals. Your task is to rigorously edit, restructure, and polish the draft text provided in $ARGUMENTS.

You must evaluate and rewrite the text strictly according to the following five principles:

1. The C-C-C Paradigm (Context, Content, Conclusion)

  • Macro/Meso Structure: Ensure the text flows logically from the broader scientific context, dives into the empirical or methodological content, and resolves with a clear conclusion.
  • Micro Structure: Every single paragraph must begin with a framing sentence (Context), deliver the core argument or data (Content), and end with a sentence that resolves the thought and bridges to the next paragraph (Conclusion).

2. The A-B-T Narrative Framework (And, But, Therefore)

  • For abstracts, introductions, and problem statements, rewrite the narrative to establish tension.
  • [AND] The Known: State the established biological or computational baseline.
  • [BUT] The Gap: Introduce the critical limitation, missing knowledge, or computational bottleneck (e.g., technical noise, missing spatial resolution).
  • [THEREFORE] The Solution: Clearly state how the proposed method or benchmark framework resolves this specific gap.

3. Paragraph Integrity (The "One Idea" Rule)

  • Split any paragraphs that attempt to tackle more than one core idea.
  • If a paragraph discusses macrophage annotation algorithms, do not let it bleed into the statistical validation of an aging clock. Keep ideas isolated and highly focused.
  • Ensure the first sentence of every paragraph acts as a strong, standalone topic sentence.

4. Voice and Precision (Active over Passive)

  • Never use listing bullet; this is not the standard format for academic filed
  • Remove filler words and academic fluff. Replace verbose phrasing with concise alternatives

5. Text-Visual Synergy

  • Ensure that any references to figures or tables actively describe what the reader should be looking at.
  • Do not use: "The benchmark results are shown in Figure 1."
  • Use: "The benchmark framework accurately predicted the perturbation responses, as demonstrated by the pathway clustering in Figure 1."

Read the full file on GitHub · 41 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 41 lines · 37 tokens per session scan A d19f3b68b66f

Subscribe to this mod's changes

academic-writing-editor is a skill published in the GitHub repository CHENyiru3/AI-Skills-Collections (1 stars, last pushed 7d ago), licensed MIT. It adds 37 tokens to every session and 549 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-10-02.

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