What is clinical-decision-support?

A document-writing skill for clinical research and pharmaceutical work. It creates patient-group analyses and evidence-based treatment recommendation reports, rather than plans for treating one person at the bedside.

Use it to prepare biomarker-based cohort analyses, treatment guidelines, decision algorithms, and publication-ready LaTeX or PDF documents.

It turns research evidence and group outcomes into structured documents for medical decision-making and drug development. It also distinguishes research reports from individual patient care.

clinical-decision-support — Skill for Claude Code by crazymsn

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent

npx skills add crazymsn/academic-skills --skill clinical-decision-support

Clone the repo

git clone --depth 1 https://github.com/crazymsn/academic-skills

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/skills/crazymsn/academic-skills/clinical-decision-support/github.svg)](https://agentmods.dev/skills/crazymsn/academic-skills/clinical-decision-support)

Your own site

<a href="https://agentmods.dev/skills/crazymsn/academic-skills/clinical-decision-support"><img src="https://agentmods.dev/badge/skills/crazymsn/academic-skills/clinical-decision-support/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/skills/crazymsn/academic-skills/clinical-decision-support"><img src="https://agentmods.dev/badge/skills/crazymsn/academic-skills/clinical-decision-support.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 97 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.

When invoked 5,860 The whole file, excluding the scripts and references it only reads on demand.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin 98% copy Near-identical to another mod in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.00097	$0.05860
Opus 5	$0.00048	$0.02930
Sonnet 5	$0.00019	$0.01172
Haiku 4.5	$0.00010	$0.00586

Measured 11d ago against content hash 98a9bbf51a98, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

clinical-decision-support scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

The scan reads SKILL.md. This mod also ships 7 executable files (scripts/biomarker_classifier.py, scripts/build_decision_tree.py, scripts/create_cohort_tables.py, …), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

98% identical to clinical-decision-support — 10 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

academic-skills/clinical-decision-support/SKILL.md · 508 lines

How it starts

The opening of the file, as written. The whole thing — 508 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Clinical Decision Support Documents

Description

Generate professional clinical decision support (CDS) documents for pharmaceutical companies, clinical researchers, and medical decision-makers. This skill specializes in analytical, evidence-based documents that inform treatment strategies and drug development:

Patient Cohort Analysis - Biomarker-stratified group analyses with statistical outcome comparisons
Treatment Recommendation Reports - Evidence-based clinical guidelines with GRADE grading and decision algorithms

All documents are generated as publication-ready LaTeX/PDF files optimized for pharmaceutical research, regulatory submissions, and clinical guideline development.

Note: For individual patient treatment plans at the bedside, use the treatment-plans skill instead. This skill focuses on group-level analyses and evidence synthesis for pharmaceutical/research settings.

Writing Style: For publication-ready documents targeting medical journals, consult the venue-templates skill's medical_journal_styles.md for guidance on structured abstracts, evidence language, and CONSORT/STROBE compliance.

Capabilities

Document Types

Patient Cohort Analysis

Biomarker-based patient stratification (molecular subtypes, gene expression, IHC)
Molecular subtype classification (e.g., GBM mesenchymal-immune-active vs proneural, breast cancer subtypes)
Outcome metrics with statistical analysis (OS, PFS, ORR, DOR, DCR)
Statistical comparisons between subgroups (hazard ratios, p-values, 95% CI)
Survival analysis with Kaplan-Meier curves and log-rank tests
Efficacy tables and waterfall plots
Comparative effectiveness analyses
Pharmaceutical cohort reporting (trial subgroups, real-world evidence)

Treatment Recommendation Reports

Evidence-based treatment guidelines for specific disease states
Strength of recommendation grading (GRADE system: 1A, 1B, 2A, 2B, 2C)
Quality of evidence assessment (high, moderate, low, very low)
Treatment algorithm flowcharts with TikZ diagrams
Line-of-therapy sequencing based on biomarkers
Decision pathways with clinical and molecular criteria
Pharmaceutical strategy documents
Clinical guideline development for medical societies

Read the full file on GitHub · 508 lines

Files

What ships with it

21 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

11d ago First seen · 508 lines · 97 tokens per session scan A 98a9bbf51a98

Subscribe to this mod's changes

clinical-decision-support is a skill published in the GitHub repository crazymsn/academic-skills (22 stars, last pushed 3mo ago), licensed MIT. It adds 97 tokens to every session and 5,860 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. It is 98% identical to clinical-decision-support, differing in 10 lines, and is treated as a copy.

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