dmt-har-med-skill

dmt-har-med-skill is a skill for Claude Code, Codex from CUHK-AIM-Group/NeuroClaw. It costs 123 tokens per session (1,838 once invoked), scanned A, original, MIT.

A workflow guide for the DMT-HAR-MED dataset, a public collection of resting-state fMRI brain scans and related measurements from a DMT psychedelic-intervention study. It organizes the data using BIDS, a standard layout for neuroimaging files, before processing it.

In plain words
What is it for?
Use it to download OpenNeuro dataset ds006644, arrange and validate its BIDS files, extract participant and condition data, create quality-control summaries, and hand fMRI processing to the appropriate tool.
Why use it?
It gives the dataset a fixed path from download through organization, validation, processing, participant information, and quality checks. This makes the work easier to reproduce and review.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions subagents.

Good fit Use it to download OpenNeuro dataset ds006644, arrange and validate its BIDS files, extract participant and condition data, create quality-control summaries, and hand fMRI processing to the appropriate tool.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/cuhk-aim-group/neuroclaw/dmt-har-med-skill
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add CUHK-AIM-Group/NeuroClaw --skill dmt-har-med-skill
Clone the repo
git clone --depth 1 https://github.com/CUHK-AIM-Group/NeuroClaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for dmt-har-med-skill

README.md
[![agentmods](https://agentmods.dev/badge/skills/cuhk-aim-group/neuroclaw/dmt-har-med-skill/github.svg)](https://agentmods.dev/skills/cuhk-aim-group/neuroclaw/dmt-har-med-skill)
Your own site
<a href="https://agentmods.dev/skills/cuhk-aim-group/neuroclaw/dmt-har-med-skill"><img src="https://agentmods.dev/badge/skills/cuhk-aim-group/neuroclaw/dmt-har-med-skill/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for dmt-har-med-skill

Your own site · 80×15
<a href="https://agentmods.dev/skills/cuhk-aim-group/neuroclaw/dmt-har-med-skill"><img src="https://agentmods.dev/badge/skills/cuhk-aim-group/neuroclaw/dmt-har-med-skill.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 123 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,838 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00123 $0.01838
Opus 5 $0.00062 $0.00919
Sonnet 5 $0.00025 $0.00368
Haiku 4.5 $0.00012 $0.00184

Measured 12d ago against content hash e09cee09526b, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

dmt-har-med-skill scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

The scan reads SKILL.md. This mod also ships 3 executable files (scripts/dmt_har_med_qc_summary.py, scripts/extract_dmt_har_med_phenotype.py, scripts/reorganize_dmt_har_med.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/dmt-har-med-skill/SKILL.md · 184 lines

How it starts

The opening of the file, as written. The whole thing — 184 lines — stays where its author put it; the contents beside it link to each section on GitHub.

DMT-HAR-MED Skill (Dataset-Orchestration Layer)

Overview

dmt-har-med-skill is the NeuroClaw orchestration skill for the DMT-HAR-MED dataset (OpenNeuro ds006644).

DMT-HAR-MED contains rs-fMRI data from 40 participants in a psychedelic intervention study investigating the effects of N,N-Dimethyltryptamine (DMT) on brain function. The dataset includes multiple experimental conditions (DMT, placebo) and behavioral/physiological measurements.

It coordinates a fixed three-phase workflow:

  1. Download DMT-HAR-MED data from OpenNeuro.
  2. Prepare and validate BIDS-style data organization.
  3. Delegate fMRI processing to fmri-skill.

It also provides phenotype extraction and QC integration paths:

  • Extract DMT-HAR-MED phenotype data (intervention conditions, behavioral measures).
  • Generate per-subject QC summaries with exclusion lists.

This skill follows NeuroClaw hierarchy:

  • Defines WHAT to do, not low-level implementation details.
  • Does not execute direct shell commands itself.
  • Delegates all execution via claw-shell to base/tool skills.

Research use only.


Download Stage (Mandatory First Step)

Source

DMT-HAR-MED data is available on OpenNeuro:

Supported DMT-HAR-MED Data Packages

  • Imaging data: rs-fMRI (NIfTI format)
  • Phenotype data: intervention conditions, behavioral and physiological measurements
  • Participants: 40 participants with psychedelic intervention

Delegation Rules for Download

  • Environment/setup checks: dependency-planner + conda-env-manager
  • OpenNeuro dataset download: claw-shell (via openneuro CLI or datalad)
  • Optional raw-data organization to BIDS-style staging: bids-organizer

Download Inputs to Confirm in Plan

  • Subject list scope (full or custom subset)
  • Destination directory with sufficient disk space

Core Workflow (Never Bypassed)

  1. Identify user target: download, BIDS staging, or full preprocessing.
  2. Generate a numbered plan with tools, outputs, runtime, storage, and risks.
  3. Wait for explicit confirmation (YES / execute / proceed).
  4. On confirmation, run download stage first (if needed).
  5. After download success, verify/prepare BIDS staging using scripts/reorganize_dmt_har_med.py.
  6. Delegate to fmri-skill for rs-fMRI processing.
  7. If phenotype extraction is requested, run scripts/extract_dmt_har_med_phenotype.py.
  8. If QC summary is requested, run scripts/dmt_har_med_qc_summary.py.
  9. Save outputs into a DMT-HAR-MED-centered structure under dmt_har_med_output/.

Read the full file on GitHub · 184 lines

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 184 lines · 123 tokens per session scan A e09cee09526b

Subscribe to this mod's changes

dmt-har-med-skill is a skill published in the GitHub repository CUHK-AIM-Group/NeuroClaw (84 stars, last pushed 5d ago), licensed MIT. It adds 123 tokens to every session and 1,838 once invoked, about $0.0006 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other skills, from other repositories

instrument-data-to-allotrope

Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…

anthropics/knowledge-work-plugins · 123 tokens

exploratory-data-analysis

Perform bounded, local exploratory analysis of explicitly supported scientific files. Use for redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits; outlier and transformation sensitivity; and rigorous EDA report scaffolds. Other domain…

K-Dense-AI/scientific-agent-skills · 83 tokens

matlab

Build, review, migrate, and safely plan MATLAB or GNU Octave numerical workflows, including arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.

K-Dense-AI/scientific-agent-skills · 42 tokens

phylogenetics

Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.

K-Dense-AI/scientific-agent-skills · 68 tokens

research-engineer

An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology.

davila7/claude-code-templates · 43 tokens

mapping-to-snomed

Maps clinical concept spans extracted by OpenMed to SNOMED CT concepts through a USER-SUPPLIED terminology server (the user's own Ontoserver, Snowstorm, or UMLS/UTS), never a bundled vocabulary. Use when the user wants to code findings, disorders, procedures, body structures, or substances to SNOMED CT, run an ECL…

maziyarpanahi/openmed · 205 tokens