Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the Natural Scenes Dataset (NSD), including data access, BIDS validation, multimodal processing of task-fMRI and structural MRI, stimulus metadata extraction, and QC integration. Triggers include: 'NSD', 'Natural Scenes Dataset', 'process NSD data'…
Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the OASIS (Open Access Series of Imaging Studies) dataset, including BIDS validation, multimodal processing of sMRI, and phenotype extraction for aging and Alzheimer's disease research. Triggers include: 'OASIS', 'OASIS-1', 'OASIS-2', 'OASIS-3'…
Skill Claude CodeCodex
Use this skill whenever the user wants to generate a full academic paper draft from existing research materials. Triggers include: 'write paper', 'generate manuscript', 'draft paper', 'paper-writing', 'hierarchical drafting', 'manuscript composer', 'create LaTeX paper', 'write research paper from IDEA METHOD…
Skill Claude CodeCodex
Use this skill whenever the user wants to process PET neuroimaging data including spatial normalization to T1w/MNI space, SUVR computation, reference region quantification, partial volume correction, or tracer-specific workflows (PiB amyloid, FDG metabolism, tau). Triggers include: 'PET', 'PET processing', 'SUVR'…
Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the Philadelphia Neurodevelopmental Cohort (PNC) dataset, including BIDS validation, multimodal processing of sMRI, rs-fMRI, task-fMRI, and dMRI, phenotype extraction, and QC integration. Triggers include: 'PNC', 'Philadelphia Neurodevelopmental…
Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the Parkinson's Progression Markers Initiative (PPMI) dataset, including BIDS validation, multimodal processing of sMRI, rs-fMRI, and dMRI, phenotype extraction, and QC integration. Triggers include: 'PPMI', 'Parkinson', 'Parkinson disease', 'process…
Skill Claude CodeCodex
Use this skill whenever the user wants to run QSIPrep (BIDS App) for diffusion MRI (DWI) preprocessing with best-practice workflows (topup/eddy, denoising/unringing options, susceptibility/motion correction, coregistration/normalization, QC reports) on BIDS datasets. This skill is the NeuroClaw interface-layer wrapper…
Skill Claude CodeCodex
Use this skill whenever the user wants to generate or refine a research idea through literature search and discussion. Triggers include: 'research idea', 'brainstorm idea', 'generate idea', 'research-idea', 'idea generation', 'discuss new direction', or any request to explore literature and output to IDEA.md. This…
Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the REST-meta-MDD (Resting-State Meta-Major Depressive Disorder) dataset, including BIDS validation, processing of rs-fMRI, phenotype extraction, and QC integration. Triggers include: 'REST-meta-MDD', 'MDD', 'Major Depressive Disorder', 'depression…
Skill Claude CodeCodex
Use this skill whenever the user wants to run phenotype-prediction models, browse model cards, map model inputs/outputs, or choose an execution route for fMRI/sMRI based models. This is a model-entry orchestration skill: it routes requests to model-specific docs and delegates preprocessing to modality skills.
Skill Codex
Use this skill for the Standardized Centralized Alzheimer's and Related Dementias Neuroimaging (SCAN) cohort, including NACC access planning, approved-export inventory, DICOM/NIfTI staging, BIDS organization, phenotype linkage, and MRI/PET processing. Trigger on 'SCAN dataset', 'NACC SCAN', 'ADRC imaging', 'SCAN MRI'…
Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the SEED-IV (SJTU Emotion EEG Dataset - 4 emotions) dataset, including EEG validation, preprocessing, feature extraction, and emotion classification. Triggers include: 'SEED-IV', 'SEED4', 'emotion EEG', 'EEG emotion recognition', 'process SEED-IV', or…
Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the SEED-VIG (SJTU Emotion EEG Dataset - Vigilance) dataset, including EEG validation, preprocessing, feature extraction, and vigilance/fatigue detection. Triggers include: 'SEED-VIG', 'SEEDVIG', 'vigilance EEG', 'fatigue detection', 'drowsiness EEG'…
Skill Claude CodeCodex
Use this skill after a task succeeds (user confirms 'success' or tools report success). It extracts new experience from the session log + daily memory, locates relevant skills, and proposes diff-formatted updates to SKILL.md files with a clear summary for the user.
Skill Claude CodeCodex
Use this skill whenever the user wants to process structural MRI (sMRI) such as T1w/T2w/FLAIR for brain extraction, bias correction, tissue segmentation (GM/WM/CSF), registration to MNI, cortical/subcortical parcellation, cortical thickness/volumetry (FreeSurfer), HCP-style structural preprocessing, WMH lesion…
Skill Claude CodeCodex needs its repo
Use this model doc whenever the user wants to perform disease classification with SpaceNet. This is a non-deep-learning supervised route focused on voxel-wise neuroimaging-based case-control prediction with sparse and interpretable weight maps.
Skill Claude CodeCodex
Use this skill whenever the user needs classical statistical inference or tabular machine learning for neuroimaging-derived features: OLS/GLM, Cohen's d, logistic regression, Ridge, Elastic Net, SVM/SVR, XGBoost, mixed-effects models, site-aware cross-validation, or imaging-by-treatment interactions. Triggers include…
Skill Claude CodeCodex
Use this skill whenever the user wants unsupervised disease subtyping, patient stratification, latent phenotype discovery, cluster stability analysis, or low-dimensional embeddings from neuroimaging features. It supports K-means, Gaussian mixture models, spectral clustering, NMF, consensus clustering, PCA embeddings…
Skill Claude CodeCodex
Use this skill whenever the outcome is right-censored time-to-event data, including progression, conversion, relapse, hospitalization, or mortality prediction. It supports Cox proportional hazards, Random Survival Forest, DeepSurv, and XGBoost Cox survival with censor-aware cross-validation. Triggers include 'survival…
Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the Transdiagnostic Connectome Project (TCP) dataset, including BIDS validation, multimodal processing of sMRI, rs-fMRI, and dMRI, phenotype extraction, and QC integration. Triggers include: 'TCP', 'Transdiagnostic Connectome', 'process TCP data', 'TCP…
Skill Claude CodeCodex
Use this skill whenever the input contains ordered repeated measurements, longitudinal visits, ROI time series, dynamic connectivity features, or variable-length sequences. It supports LSTM, GRU, temporal convolutional networks, and temporal Transformers for classification and regression. Triggers include…
Skill Claude CodeCodex
Use this skill whenever the user wants an end-to-end workflow for the UCLA CNP (Consortium for Neuropsychiatric Phenomics) dataset, including BIDS validation, multimodal processing of sMRI, task-fMRI, and dMRI, phenotype extraction, and QC integration. Triggers include: 'UCLA CNP', 'Consortium Neuropsychiatric…
Skill Claude CodeCodex
Use this skill whenever the user wants to analyze already available UK Biobank data for brain-related research, including neurological outcomes, cognitive phenotypes, brain MRI derived phenotypes, survival analysis, subgroup analysis, propensity score analysis, mediation analysis, sensitivity analysis, machine…
Skill Claude CodeCodex
Use this skill whenever the user wants to perform automated white matter hyperintensity (WMH) segmentation on structural MRI data using the MARS-WMH nnU-Net model. Requires one FLAIR and one T1w NIfTI image (no contrast). Triggers include: 'wmh', 'white matter hyperintensities', 'WMH segmentation', 'MARS-WMH'…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: