deepxiv-cli

deepxiv-cli is a skill for Codex from DeepXiv/deepxiv_sdk. It costs 131 tokens per session (4,575 once invoked), scanned A, original, MIT.

A command-line tool for finding and reading open academic papers from arXiv, PubMed Central, bioRxiv, and medRxiv. arXiv is a preprint repository for research papers; bioRxiv and medRxiv are repositories for biology and medical papers shared before formal journal review.

In plain words
What is it for?
Searching papers, answering questions about research, getting a short paper overview, viewing its structure, and reading selected sections.
Why use it?
It lets developers search research by meaning, inspect only relevant sections, and get answers tied to papers instead of reading every document from start to finish.

Skill for Codex

Written for Codex: agents/openai.yaml present. Also seen: mentions Codex.

Good fit Searching papers, answering questions about research, getting a short paper overview, viewing its structure, and reading selected sections.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/deepxiv/deepxiv_sdk/deepxiv-cli
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add DeepXiv/deepxiv_sdk --skill deepxiv-cli
Clone the repo
git clone --depth 1 https://github.com/DeepXiv/deepxiv_sdk

Made for: Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for deepxiv-cli

README.md
[![agentmods](https://agentmods.dev/badge/skills/deepxiv/deepxiv_sdk/deepxiv-cli/github.svg)](https://agentmods.dev/skills/deepxiv/deepxiv_sdk/deepxiv-cli)
Your own site
<a href="https://agentmods.dev/skills/deepxiv/deepxiv_sdk/deepxiv-cli"><img src="https://agentmods.dev/badge/skills/deepxiv/deepxiv_sdk/deepxiv-cli/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for deepxiv-cli

Your own site · 80×15
<a href="https://agentmods.dev/skills/deepxiv/deepxiv_sdk/deepxiv-cli"><img src="https://agentmods.dev/badge/skills/deepxiv/deepxiv_sdk/deepxiv-cli.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 131 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 4,575 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 2 findings, up to high

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • high YARA Match · line 217
    YARA rule matched a known malware signature (reverse shell, backdoor, ransomware, C2 framework, or info stealer).
    Fix: Remove the malware payload or compromised file entirely. Investigate how it entered the skill and audit all other artifacts for additional indicators of compromise.
  • medium Data Exfiltration · line 67
    Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.
    Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00131 $0.04575
Opus 5.5 $0.00052 $0.01830
Sonnet 5.5 $0.00026 $0.00915
Haiku 4.5 $0.00013 $0.00458

Measured 5d ago against content hash 648d1eed04f2, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

deepxiv-cli scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/deepxiv-cli/SKILL.md · 308 lines

How it starts

The opening of the file, as written. The whole thing — 308 lines — stays where its author put it; the contents beside it link to each section on GitHub.

DeepXiv CLI

One CLI, one token: papers (search, paper, pmc, trending, ask) plus 12 1stAuthor domains (deepxiv fa …). Everything below was run against production on 2026-10-12 with deepxiv-sdk 1.2.1.

1. Setup

pip install -U deepxiv-sdk          # `deepxiv fa` needs 1.2.0+, `fa search --sort` 1.2.1+
deepxiv --version
deepxiv token                       # shows the active token
  • Token: the first call auto-registers a free token and saves it to ~/.env (DEEPXIV_TOKEN). Every command also takes -t TOKEN.
  • Registered key: the agentic calls need one (deepxiv ask: 300/day; deepxiv fa ask: a daily ask allowance, reset at 00:00 UTC). On the auto-registered token, deepxiv ask returns 403; deepxiv fa ask works 3 times in total (stderr: 🎟️ 试用剩余 N/3 次 · Free trial: N of 3 asks left), then returns 403. Tell the user to register at https://data.rag.ac.cn/register and run deepxiv config --token THEIR_KEY. Don't spend the trial on throwaway questions, and don't retry a 403. Search and read work on either token.
  • No other keys: 1stAuthor domains go through deepxiv with the same token.

2. Which command

The task needs… Command
An answer, with citations, from the literature deepxiv ask "…"
An answer about anything non-academic (news, products, pricing) deepxiv ask "…" --web
Papers on a topic deepxiv search "…"
One paper, as cheaply as possible deepxiv paper ID --brief → --head → --section NAME
Biomedical full text deepxiv pmc PMCID, deepxiv search "…" --biorxiv/--medrxiv
What's hot on arXiv deepxiv trending --days 7
People: researchers, students, profiles, coauthors deepxiv fa … talent
Which academicians / fellows cited a paper, and what they said deepxiv fa … appraise
Statutes (China and 25 other jurisdictions) deepxiv fa … law
Court judgments (China, US) deepxiv fa … cases
US statutes, regulations, agency decisions deepxiv fa … us_law
Clinical trials (ClinicalTrials.gov) deepxiv fa … trials
US drug labels (openFDA) deepxiv fa … drugs
NSF / NIH grants deepxiv fa … grants
Company filings (SEC, China) deepxiv fa … filings
Chinese national standards (GB, GB/T) deepxiv fa … standards
Vulnerabilities (NVD + CISA KEV + EPSS) deepxiv fa … cve
US Federal Register deepxiv fa … fr
A cited answer over one of those domains deepxiv fa ask "…" -d DOMAIN

Read the full file on GitHub · 308 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago Changed · +3 lines 648d1eed04f2
  2. 12d ago Changed · -206 lines · +100 tokens per session 798e31c755c3
  3. 1mo ago Changed · +35 lines d4b6e8574eb4
  4. 1mo ago First seen · 476 lines · 31 tokens per session scan A 89f81ddab86f

Subscribe to this mod's changes

deepxiv-cli is a skill published in the GitHub repository DeepXiv/deepxiv_sdk (838 stars, last pushed 6d ago), licensed MIT. It adds 131 tokens to every session and 4,575 once invoked, about $0.0005 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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