galaxy-automation

galaxy-automation is a skill for Claude Code, Codex from Delphine-L/claude_global. It costs 43 tokens per session (2,315 once invoked), scanned C, original, no licence file.

A guide for automating Galaxy, a web platform for data analysis, through its API and the BioBlend and Planemo Python tools. It covers starting workflows, checking their status, handling errors, processing batches, and managing datasets.

In plain words
What is it for?
Use it to submit Galaxy workflows, monitor runs, process batches, handle failures, and manage the resulting datasets.
Why use it?
It removes repetitive manual work when running Galaxy analyses or moving data through many workflow jobs.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it to submit Galaxy workflows, monitor runs, process batches, handle failures, and manage the resulting datasets.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/delphine-l/claude_global/automation
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Delphine-L/claude_global --skill automation
Clone the repo
git clone --depth 1 https://github.com/Delphine-L/claude_global

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for galaxy-automation

README.md
[![agentmods](https://agentmods.dev/badge/skills/delphine-l/claude_global/automation/github.svg)](https://agentmods.dev/skills/delphine-l/claude_global/automation)
Your own site
<a href="https://agentmods.dev/skills/delphine-l/claude_global/automation"><img src="https://agentmods.dev/badge/skills/delphine-l/claude_global/automation/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for galaxy-automation

Your own site · 80×15
<a href="https://agentmods.dev/skills/delphine-l/claude_global/automation"><img src="https://agentmods.dev/badge/skills/delphine-l/claude_global/automation.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 43 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,315 The whole file, excluding the scripts and references it only reads on demand.
Security scan C 3 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00043 $0.02315
Opus 5.5 $0.00017 $0.00926
Sonnet 5.5 $0.00009 $0.00463
Haiku 4.5 $0.00004 $0.00231

Measured yesterday against content hash c440a6d9164b, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade C, and why

galaxy-automation scanned grade C with 3 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Downloads and executes remote codehighSupply chain

curl | sh runs whatever the server returns today, which is not necessarily what it returned when this was reviewed.

curl -s -H "x-api-key: $MAINKEY" "$GXYVGP/api/invocations/$INV" | python3 -m json.tool

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

- **[planemo-reference.md](planemo-reference.md)** -- Planemo command structure, job YAML format, programmatic command generation, output parsing, and Galaxy API curl/authentication patterns

Runs shell commandslowCapability

Expected in a hook, worth knowing in a rule or an instructions file.

- `os.system()` shifts exit codes (exit 1 -> return 256)
skills/galaxy/automation/SKILL.md · 235 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday Changed · +28 lines scan A → C c440a6d9164b
  2. 2mo ago First seen · 207 lines · 43 tokens per session scan A a512fe58dd9e

Subscribe to this mod's changes

galaxy-automation is a skill published in the GitHub repository Delphine-L/claude_global (23 stars, last pushed yesterday), with no licence file. It adds 43 tokens to every session and 2,315 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it C with 3 findings (downloads and executes remote code, makes network calls, runs shell commands). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

galaxy-automation compared with skills from other repositories

galaxy-automation next to 6 skills from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
galaxy-automationDelphine-L/claude_globalSkill23yesterdaynoneC43Claude Code, Codex
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deepspot-mK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA70Claude Code
torchdrugK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA64Claude Code
pyhealthK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA84Claude Code, Codex
nemo-mbridge-perf-expert-parallel-overlapNVIDIA/skillsSkill3.9kyesterdayApache-2.0A56Claude Code
ml-training-recipesOrchestra-Research/AI-Research-SKILLsSkill14k27d agoMITA88Claude Code