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vgp-pipeline

vgp-pipeline is a skill for Claude Code, Codex from Delphine-L/claude_global. It costs 24 tokens per session (4,308 once invoked), scanned A, original, no licence file.

Guidance for running the VGP assembly pipeline, including choosing and executing Galaxy workflows. Galaxy is a web-based platform for running scientific data-analysis workflows.

In plain words
What is it for?
Use it to select workflows, run them, check quality-control points, and orchestrate batches of samples.
Why use it?
It helps structure assembly runs, apply quality checks, and coordinate work across multiple samples.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

not rated 23repo changed yesterday A scan 24 tokens no licence

Good fit Use it to select workflows, run them, check quality-control points, and orchestrate batches of samples.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/delphine-l/claude_global/vgp-pipeline
View source ↗ Delphine-L/claude_global
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Delphine-L/claude_global --skill vgp-pipeline
Clone the repo
git clone --depth 1 https://github.com/Delphine-L/claude_global

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for vgp-pipeline

README.md
[![agentmods](https://agentmods.dev/badge/skills/delphine-l/claude_global/vgp-pipeline/github.svg)](https://agentmods.dev/skills/delphine-l/claude_global/vgp-pipeline)
Your own site
<a href="https://agentmods.dev/skills/delphine-l/claude_global/vgp-pipeline"><img src="https://agentmods.dev/badge/skills/delphine-l/claude_global/vgp-pipeline/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for vgp-pipeline

Your own site · 80×15
<a href="https://agentmods.dev/skills/delphine-l/claude_global/vgp-pipeline"><img src="https://agentmods.dev/badge/skills/delphine-l/claude_global/vgp-pipeline.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 24 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 4,308 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00024 $0.04308
Opus 5.5 $0.00010 $0.01723
Sonnet 5.5 $0.00005 $0.00862
Haiku 4.5 $0.00002 $0.00431

Measured yesterday against content hash 9a21457b9036, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

vgp-pipeline scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

compleasm.py line 116: urllib.request.urlretrieve(hash_url, hash_download_path)
skills/vgp/vgp-pipeline/SKILL.md · 387 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

4 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday Changed · +35 lines 9a21457b9036
  2. 2mo ago First seen · 352 lines · 24 tokens per session scan A 0a4d47f697c8

Subscribe to this mod's changes

vgp-pipeline is a skill published in the GitHub repository Delphine-L/claude_global (23 stars, last pushed yesterday), with no licence file. It adds 24 tokens to every session and 4,308 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Scientific
Related

vgp-pipeline compared with skills from other repositories

vgp-pipeline next to 6 skills from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
vgp-pipelineDelphine-L/claude_globalSkill23yesterdaynoneA24Claude Code, Codex
instrument-data-to-allotropeanthropics/knowledge-work-pluginsSkill35k2d agoApache-2.0A123Claude Code
exploratory-data-analysisK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA83Claude Code
matlabK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA44Claude Code
phylogeneticsK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA71Claude Code, Codex
research-engineerdavila7/claude-code-templatesSkill33kyesterdayMITA43Claude Code, Codex
mapping-to-snomedmaziyarpanahi/openmedSkill5.8kyesterdayApache-2.0A205Claude Code