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dnanexus-integration

dnanexus-integration is a skill for Claude Code, Codex from drshailesh88/integrated_content_OS. It costs 49 tokens per session (2,387 once invoked), scanned A, original, no licence file.

An integration toolkit for DNAnexus, a cloud platform for storing and processing genomic data. It supports the Python SDK, data transfer, and workflows involving files such as FASTQ, BAM, and VCF.

In plain words
What is it for?
Use it to build DNAnexus apps, upload or download genomic files, and execute genomics workflows.
Why use it?
It helps connect genomics code to cloud data and computing, so sequencing pipelines can be run and managed on DNAnexus.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

not rated 6repo 4mo ago A scan 49 tokens no licence

Good fit Use it to build DNAnexus apps, upload or download genomic files, and execute genomics workflows.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/drshailesh88/integrated_content_os/dnanexus-integration
View source ↗ drshailesh88/integrated_content_OS
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add drshailesh88/integrated_content_OS --skill dnanexus-integration
Clone the repo
git clone --depth 1 https://github.com/drshailesh88/integrated_content_OS

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for dnanexus-integration

README.md
[![agentmods](https://agentmods.dev/badge/skills/drshailesh88/integrated_content_os/dnanexus-integration/github.svg)](https://agentmods.dev/skills/drshailesh88/integrated_content_os/dnanexus-integration)
Your own site
<a href="https://agentmods.dev/skills/drshailesh88/integrated_content_os/dnanexus-integration"><img src="https://agentmods.dev/badge/skills/drshailesh88/integrated_content_os/dnanexus-integration/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for dnanexus-integration

Your own site · 80×15
<a href="https://agentmods.dev/skills/drshailesh88/integrated_content_os/dnanexus-integration"><img src="https://agentmods.dev/badge/skills/drshailesh88/integrated_content_os/dnanexus-integration.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 49 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,387 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00049 $0.02387
Opus 5.5 $0.00020 $0.00955
Sonnet 5.5 $0.00010 $0.00477
Haiku 4.5 $0.00005 $0.00239

Measured 2mo ago against content hash 83c276f7d071, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

dnanexus-integration scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Runs shell commandslowCapability

Expected in a hook, worth knowing in a rule or an instructions file.

subprocess.check_call([
skills/scientific/dnanexus-integration/SKILL.md · 377 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

5 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 377 lines · 49 tokens per session scan A 83c276f7d071

Subscribe to this mod's changes

dnanexus-integration is a skill published in the GitHub repository drshailesh88/integrated_content_OS (6 stars, last pushed 4mo ago), with no licence file. It adds 49 tokens to every session and 2,387 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 1 finding (runs shell commands). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

CloudDevOps and cloudScientific
Related

dnanexus-integration compared with skills from other repositories

dnanexus-integration next to 6 skills from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
dnanexus-integrationdrshailesh88/integrated_content_OSSkill64mo agononeA49Claude Code, Codex
nextflowK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA74Claude Code, Codex
latchbio-integrationK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA78Claude Code
remote-compute-sshaipoch/open-scienceSkill5.5kyesterdayApache-2.0A53Claude Code, Codex
modal-computecompanion-inc/feynmanSkill10k6d agoMITA39Claude Code, Codex
dnanexus-integrationsynthetic-sciences/openscienceSkill4.3k2d agoApache-2.0A49Claude Code, Codex
latchbio-integrationsynthetic-sciences/openscienceSkill4.3k2d agoApache-2.0A45Claude Code, Codex