mne-stats

mne-stats is a skill for Claude Code, Codex from Exekiel179/MNE-MCP. It costs 234 tokens per session (2,188 once invoked), scanned A, original, MIT.

A statistical testing workflow for EEG, MEG, and related brain-signal results produced by other MNE analyses.

In plain words
What is it for?
Use it to run mass-univariate tests, cluster-based permutation tests, threshold-free cluster enhancement, or false-discovery-rate correction while checking whether the planned claims are supported.
Why use it?
It helps distinguish real evidence from patterns created by testing many sensors, times, frequencies, or brain locations without suitable correction.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions subagents.

Good fit Use it to run mass-univariate tests, cluster-based permutation tests, threshold-free cluster enhancement, or false-discovery-rate correction while checking whether the planned claims are supported.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/exekiel179/mne-mcp/mne-stats
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Exekiel179/MNE-MCP --skill mne-stats
Clone the repo
git clone --depth 1 https://github.com/Exekiel179/MNE-MCP

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for mne-stats

README.md
[![agentmods](https://agentmods.dev/badge/skills/exekiel179/mne-mcp/mne-stats/github.svg)](https://agentmods.dev/skills/exekiel179/mne-mcp/mne-stats)
Your own site
<a href="https://agentmods.dev/skills/exekiel179/mne-mcp/mne-stats"><img src="https://agentmods.dev/badge/skills/exekiel179/mne-mcp/mne-stats/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for mne-stats

Your own site · 80×15
<a href="https://agentmods.dev/skills/exekiel179/mne-mcp/mne-stats"><img src="https://agentmods.dev/badge/skills/exekiel179/mne-mcp/mne-stats.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 234 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,188 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00234 $0.02188
Opus 5 $0.00117 $0.01094
Sonnet 5 $0.00047 $0.00438
Haiku 4.5 $0.00023 $0.00219

Measured 11d ago against content hash 52489c239437, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

mne-stats scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/mne-stats/SKILL.md · 153 lines

How it starts

The opening of the file, as written. The whole thing — 153 lines — stays where its author put it; the contents beside it link to each section on GitHub.

MNE Statistics (grill → analyze → critic)

Statistical inference on neurophysiology data via the MNE MCP server. This is the cross-cutting skill: it consumes the outputs of mne-erp, mne-timefreq, mne-connectivity, and mne-source and decides what can actually be claimed from them. It is skeptical by design: most statistical mistakes (conflating cluster-level with point inference, an incomplete correction family, asserting normality at small n) run without any error — so the discipline is to grill before testing and critique before believing.

Companion skills: mne-mcp-guard for technical execution safety; mne-methodology-critic for Phase 3. Loaded objects (evoked / TFR / connectivity / stc arrays) persist in one MNE session.


PHASE 1 — GRILL (before testing anything)

Do not run a test until these are answered. If the user can't answer one, propose a sensible default and explicitly flag the open risk — never silently choose.

Design & claim

  • What is the hypothesis, and what is the comparison? (condition × condition, group × group, pre × post, vs a baseline / vs zero)
  • Within- or between-subject? Paired or independent? n per cell, and is there power for it?
  • Confirmatory (hypothesis + ROI/window/band pre-specified) or exploratory (whole grid, corrected)?

The two questions that decide validity

  • What is the statistical FAMILY — exactly which dimensions are tested? Enumerate channels × times × freqs × ROIs × conditions. The correction must cover the entire family, including exploratory tests you ran but won't headline. An undercounted family is the single most common fatal error here.
  • Cluster-level or point inference? ⚠️ A cluster-based permutation test licenses a claim about a cluster (a contiguous blob in space/time/freq), not about any specific channel, time, or frequency inside it. You may NOT say "Cz at 320 ms is significant" from a cluster test. If you need point/peak inference, you need a different, pre-specified test. Decide which claim you're making before you run.

Read the full file on GitHub · 153 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 153 lines · 234 tokens per session scan A 52489c239437

Subscribe to this mod's changes

mne-stats is a skill published in the GitHub repository Exekiel179/MNE-MCP (7 stars, last pushed 2mo ago), licensed MIT. It adds 234 tokens to every session and 2,188 once invoked, about $0.0012 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Related

Other skills, from other repositories

instrument-data-to-allotrope

Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…

anthropics/knowledge-work-plugins · 123 tokens

exploratory-data-analysis

Perform bounded, local exploratory analysis of explicitly supported scientific files. Use for redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits; outlier and transformation sensitivity; and rigorous EDA report scaffolds. Other domain…

K-Dense-AI/scientific-agent-skills · 83 tokens

matlab

Build, review, migrate, and safely plan MATLAB or GNU Octave numerical workflows, including arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.

K-Dense-AI/scientific-agent-skills · 42 tokens

phylogenetics

Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.

K-Dense-AI/scientific-agent-skills · 68 tokens

research-engineer

An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology.

davila7/claude-code-templates · 43 tokens

mapping-to-snomed

Maps clinical concept spans extracted by OpenMed to SNOMED CT concepts through a USER-SUPPLIED terminology server (the user's own Ontoserver, Snowstorm, or UMLS/UTS), never a bundled vocabulary. Use when the user wants to code findings, disorders, procedures, body structures, or substances to SNOMED CT, run an ECL…

maziyarpanahi/openmed · 205 tokens