mne-writeup

mne-writeup is a skill for Claude Code, Codex from Exekiel179/MNE-MCP. It costs 207 tokens per session (1,510 once invoked), scanned A, original, MIT.

A writing tool for turning completed, checked EEG, MEG, or intracranial EEG analyses into parts of a research paper. It focuses on the Methods and Results sections and can also cover other sections.

In plain words
What is it for?
Use it to draft APA 7 research-paper sections from MNE analysis files, with traceable numbers and clearly stated warnings or limitations.
Why use it?
It helps prevent unsupported findings or invented statistics from appearing in a manuscript by using archived analysis results and reporting only results that passed review.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to draft APA 7 research-paper sections from MNE analysis files, with traceable numbers and clearly stated warnings or limitations.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/exekiel179/mne-mcp/mne-writeup
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Exekiel179/MNE-MCP --skill mne-writeup
Clone the repo
git clone --depth 1 https://github.com/Exekiel179/MNE-MCP

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for mne-writeup

README.md
[![agentmods](https://agentmods.dev/badge/skills/exekiel179/mne-mcp/mne-writeup/github.svg)](https://agentmods.dev/skills/exekiel179/mne-mcp/mne-writeup)
Your own site
<a href="https://agentmods.dev/skills/exekiel179/mne-mcp/mne-writeup"><img src="https://agentmods.dev/badge/skills/exekiel179/mne-mcp/mne-writeup/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for mne-writeup

Your own site · 80×15
<a href="https://agentmods.dev/skills/exekiel179/mne-mcp/mne-writeup"><img src="https://agentmods.dev/badge/skills/exekiel179/mne-mcp/mne-writeup.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 207 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,510 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00207 $0.01510
Opus 5.5 $0.00083 $0.00604
Sonnet 5.5 $0.00041 $0.00302
Haiku 4.5 $0.00021 $0.00151

Measured 1mo ago against content hash 14744735c6be, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

mne-writeup scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/mne-writeup/SKILL.md · 98 lines

How it starts

The opening of the file, as written. The whole thing — 98 lines — stays where its author put it; the contents beside it link to each section on GitHub.

MNE Write-up (verified results → manuscript)

The back end of the analysis suite: after the per-category skills have run and mne-methodology-critic has ruled, this skill writes the result up. It mirrors the ARS academic-paper workflow (config → outline → draft → citation/integrity → format) but is specialised for neurophysiology and is gated by the critic.

Companion: mne-methodology-critic (the gate); the per-category analysis skills (the source of results); mne-analyst (the archiving convention this reads from). For a full multi-section paper with literature search and peer review, hand off to the ARS academic-paper / academic-pipeline skills — this skill specialises in the Methods + Results of an MNE study.

⚠️ IRON RULES

  1. Only write what PASSED. A result the critic marked BLOCK is not reported as a finding; either fix-and-re-critique first, or move it to Limitations as an acknowledged problem. WARN items must appear as explicit qualifications/limitations, never silently dropped.
  2. Every number traces to an artifact. Each reported statistic must come from a file under stats/ (or the analysis tool's output) — never invent or round-guess a value. If it isn't in an artifact, it isn't written.
  3. Methods must be reproducible. Pull exact parameters from the equivalent code archived in mne_result/ (filter band, reference, ICA method/components removed, epoch window, rejection threshold, TFR/connectivity/decoding settings, software versions). Vague methods = rejected.

Workflow

For evidence-bound interpretation of current MCP outputs, read evidence-to-claims.md. It adapts the requested academic-paper-strategist -> academic-paper-composer sequence: first align question, method, evidence and permitted claims; then draft and check numbers, terminology and limitations. These external skills are optional for downstream users, not runtime dependencies. Tool-generated interpretation and Results Draft fields are review inputs, never an automatic critic PASS or publication-ready text. Apply the user's preferred language while retaining the exact values, units, direction and inference level from the tool.

Read the full file on GitHub · 98 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago Changed · +15 lines 14744735c6be
  2. 2mo ago First seen · 83 lines · 207 tokens per session scan A 52a6859f931b

Subscribe to this mod's changes

mne-writeup is a skill published in the GitHub repository Exekiel179/MNE-MCP (12 stars, last pushed 23d ago), licensed MIT. It adds 207 tokens to every session and 1,510 once invoked, about $0.0008 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Related

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mne-writeup next to 6 skills from other repositories
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