clinpgx-database

clinpgx-database is a skill for Claude Code, Codex from foryourhealth111-pixel/Vibe-Skills. It costs 45 tokens per session (5,076 once invoked), scanned A, a copy of clinpgx-database, Apache-2.0.

A database of clinical pharmacogenomics information: research on how genetic differences can change a person's response to medicines. ClinPGx combines information from sources including PharmGKB, CPIC, and PharmCAT.

In plain words
What is it for?
It is for looking up gene-drug interactions, clinical prescribing guidelines, allele function and frequency, regulatory drug labels, and genotype-based medication decisions.
Why use it?
It helps connect genetic variants with medicine effects, guidance, and drug-label information instead of searching those sources separately.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit It is for looking up gene-drug interactions, clinical prescribing guidelines, allele function and frequency, regulatory drug labels, and genotype-based medication decisions.

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Install with agentmods
npx agentmods add skills/foryourhealth111-pixel/vibe-skills/clinpgx-database
About the project

Vibe-Skills is a collection and routing system that helps AI agents discover, select, and coordinate specialized skills for completing tasks. It is intended for agents that need to organize workflows across many installed capabilities. The catalogue entries are skills and an agent belonging to this system.

foryourhealth111-pixel/Vibe-Skills · 3,252 stars · on GitHub

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add foryourhealth111-pixel/Vibe-Skills --skill clinpgx-database
Clone the repo
git clone --depth 1 https://github.com/foryourhealth111-pixel/Vibe-Skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for clinpgx-database

README.md
[![agentmods](https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/clinpgx-database/github.svg)](https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/clinpgx-database)
Your own site
<a href="https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/clinpgx-database"><img src="https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/clinpgx-database/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for clinpgx-database

Your own site · 80×15
<a href="https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/clinpgx-database"><img src="https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/clinpgx-database.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 45 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 5,076 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin 98% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00045 $0.05076
Opus 5 $0.00023 $0.02538
Sonnet 5 $0.00009 $0.01015
Haiku 4.5 $0.00005 $0.00508

Measured 12d ago against content hash e83e7d3141b6, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

clinpgx-database scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/query_clinpgx.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

response = requests.get("https://api.clinpgx.org/v1/gene/CYP2D6")
Origin

This is a copy

98% identical to clinpgx-database — 4 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

bundled/skills/clinpgx-database/SKILL.md · 636 lines

How it starts

The opening of the file, as written. The whole thing — 636 lines — stays where its author put it; the contents beside it link to each section on GitHub.

ClinPGx Database

Overview

ClinPGx (Clinical Pharmacogenomics Database) is a comprehensive resource for clinical pharmacogenomics information, successor to PharmGKB. It consolidates data from PharmGKB, CPIC, and PharmCAT, providing curated information on how genetic variation affects medication response. Access gene-drug pairs, clinical guidelines, allele functions, and drug labels for precision medicine applications.

When to Use This Skill

This skill should be used when:

  • Gene-drug interactions: Querying how genetic variants affect drug metabolism, efficacy, or toxicity
  • CPIC guidelines: Accessing evidence-based clinical practice guidelines for pharmacogenetics
  • Allele information: Retrieving allele function, frequency, and phenotype data
  • Drug labels: Exploring FDA and other regulatory pharmacogenomic drug labeling
  • Pharmacogenomic annotations: Accessing curated literature on gene-drug-disease relationships
  • Clinical decision support: Using PharmDOG tool for phenoconversion and custom genotype interpretation
  • Precision medicine: Implementing pharmacogenomic testing in clinical practice
  • Drug metabolism: Understanding CYP450 and other pharmacogene functions
  • Personalized dosing: Finding genotype-guided dosing recommendations
  • Adverse drug reactions: Identifying genetic risk factors for drug toxicity

Installation and Setup

Python API Access

The ClinPGx REST API provides programmatic access to all database resources. Basic setup:

uv pip install requests

API Endpoint

BASE_URL = "https://api.clinpgx.org/v1/"

Rate Limits:

  • 2 requests per second maximum
  • Excessive requests will result in HTTP 429 (Too Many Requests) response

Authentication: Not required for basic access

Data License: Creative Commons Attribution-ShareAlike 4.0 International License

For substantial API use, notify the ClinPGx team at [email protected]

Core Capabilities

1. Gene Queries

Read the full file on GitHub · 636 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 636 lines · 45 tokens per session scan A e83e7d3141b6

Subscribe to this mod's changes

clinpgx-database is a skill published in the GitHub repository foryourhealth111-pixel/Vibe-Skills (3,252 stars, last pushed 11d ago), licensed Apache-2.0. It adds 45 tokens to every session and 5,076 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). It is 98% identical to clinpgx-database, differing in 4 lines, and is treated as a copy.