bio-atac-seq-atac-qc

bio-atac-seq-atac-qc is a skill for Claude Code, Codex from FreedomIntelligence/OpenClaw-Medical-Skills. It costs 55 tokens per session (2,553 once invoked), scanned A, original, no licence file.

A set of quality checks for ATAC-seq data, which measures open regions of DNA. It checks fragment patterns, signal near gene start sites, usable reads in called regions, and library complexity.

In plain words
What is it for?
Use it to assess ATAC-seq libraries and decide whether samples are suitable for further analysis.
Why use it?
It helps reveal poor-quality or problematic samples before or after identifying accessible DNA regions.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it to assess ATAC-seq libraries and decide whether samples are suitable for further analysis.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/freedomintelligence/openclaw-medical-skills/bio-atac-seq-atac-qc
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-atac-qc
Clone the repo
git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bio-atac-seq-atac-qc

README.md
[![agentmods](https://agentmods.dev/badge/skills/freedomintelligence/openclaw-medical-skills/bio-atac-seq-atac-qc/github.svg)](https://agentmods.dev/skills/freedomintelligence/openclaw-medical-skills/bio-atac-seq-atac-qc)
Your own site
<a href="https://agentmods.dev/skills/freedomintelligence/openclaw-medical-skills/bio-atac-seq-atac-qc"><img src="https://agentmods.dev/badge/skills/freedomintelligence/openclaw-medical-skills/bio-atac-seq-atac-qc/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bio-atac-seq-atac-qc

Your own site · 80×15
<a href="https://agentmods.dev/skills/freedomintelligence/openclaw-medical-skills/bio-atac-seq-atac-qc"><img src="https://agentmods.dev/badge/skills/freedomintelligence/openclaw-medical-skills/bio-atac-seq-atac-qc.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 55 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,553 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00055 $0.02553
Opus 5 $0.00028 $0.01277
Sonnet 5 $0.00011 $0.00511
Haiku 4.5 $0.00006 $0.00255

Measured 13d ago against content hash b39fbdfee242, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

bio-atac-seq-atac-qc scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 13d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Runs shell commandslowCapability

Expected in a hook, worth knowing in a rule or an instructions file.

result = subprocess.check_output(f'samtools view -c -F 4 {bam_file}', shell=True)
skills/bio-atac-seq-atac-qc/SKILL.md · 293 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 13d ago First seen · 293 lines · 55 tokens per session scan A b39fbdfee242

Subscribe to this mod's changes

bio-atac-seq-atac-qc is a skill published in the GitHub repository FreedomIntelligence/OpenClaw-Medical-Skills (3,003 stars, last pushed 1mo ago), with no licence file. It adds 55 tokens to every session and 2,553 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 1 finding (runs shell commands). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other skills, from other repositories

pilot-healthcare-triage-setup

Deploy a healthcare triage system with 4 agents for patient intake, symptom analysis, appointment scheduling, and HIPAA-compliant records. Use this skill when: 1. User wants to set up a healthcare triage or patient routing system 2. User is configuring an agent as part of a medical intake workflow 3. User asks about…

TeoSlayer/pilot-skills · 129 tokens

pilot-scientific-research-team-setup

Deploy a scientific research team with 4 agents. Use this skill when: 1. User wants to set up a collaborative research pipeline with literature review, hypothesis generation, experimentation, and reporting 2. User is configuring agents for automated scientific discovery workflows 3. User asks about research…

TeoSlayer/pilot-skills · 127 tokens

pilot-service-agents-health

Public-health and biomedical APIs — ClinicalTrials.gov, openFDA, CDC, WHO, ClinVar, DailyMed, disease.sh. Use this skill when: 1. Searching active/past clinical trials by condition, sponsor, phase 2. Drug label, adverse-event, or interaction lookups (openFDA, DailyMed) 3. COVID / epidemiological stats, WHO global…

TeoSlayer/pilot-skills · 136 tokens

pilot-service-agents-science

Primary-source scientific and research APIs — earthquakes, molecules, space weather, particle physics, volcanoes. Use this skill when: 1. Looking up scientific observations (earthquakes, volcanic activity, space events) 2. Searching molecule / drug / chemistry databases (ChEMBL, PubChem) 3. Accessing dataset catalogs…

TeoSlayer/pilot-skills · 130 tokens

pilot-service-agents-academic

Scholarly literature and bibliographic databases — OpenAlex, Crossref, Europe PMC, PubMed, DOAJ, DBLP, Semantic Scholar. Use this skill when: 1. Searching peer-reviewed works by author, title, keyword, or DOI 2. Walking the citation / funder / institution graph (OpenAlex) 3. Looking up a DBLP author page or a ROR…

TeoSlayer/pilot-skills · 145 tokens

pilot-service-agents-weather

Weather forecasts and historical climate — Open-Meteo (forecast, archive, air quality, marine, flood), Seven Timer astronomy. Use this skill when: 1. Current weather or multi-day forecast at a lat/lng 2. Historical weather archive or marine/flood forecasts 3. Air-quality (particulates, ozone, NO2) via Open-Meteo Do…

TeoSlayer/pilot-skills · 121 tokens