The largest open-source medical AI skills library for OpenClaw🦞.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Skill "bio-alignment-files-bam-statistics" from FreedomIntelligence/OpenClaw-Medical-Skills, covering copyright notice, copyright (c) 2026 md babu mia, phd, all rights reserved, this code is proprietary and confidential and provenance: authenticated by md babu mia.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Skill "bio-alignment-filtering" from FreedomIntelligence/OpenClaw-Medical-Skills, covering copyright notice, copyright (c) 2026 md babu mia, phd, all rights reserved, this code is proprietary and confidential and provenance: authenticated by md babu mia.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Skill "bio-alignment-indexing" from FreedomIntelligence/OpenClaw-Medical-Skills, covering copyright notice, copyright (c) 2026 md babu mia, phd, all rights reserved, this code is proprietary and confidential and provenance: authenticated by md babu mia.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Calculate alignment statistics including sequence identity, conservation scores, substitution matrices, and similarity metrics. Use when comparing alignment quality, measuring sequence divergence, and analyzing evolutionary patterns.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Perform pairwise sequence alignment using Biopython Bio.Align.PairwiseAligner. Use when comparing two sequences, finding optimal alignments, scoring similarity, and identifying local or global matches between DNA, RNA, or protein sequences.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Skill "bio-alignment-sorting" from FreedomIntelligence/OpenClaw-Medical-Skills, covering copyright notice, copyright (c) 2026 md babu mia, phd, all rights reserved, this code is proprietary and confidential and provenance: authenticated by md babu mia.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Skill "bio-alignment-validation" from FreedomIntelligence/OpenClaw-Medical-Skills, covering copyright notice, copyright (c) 2026 md babu mia, phd, all rights reserved, this code is proprietary and confidential and provenance: authenticated by md babu mia.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Call accessible chromatin regions from ATAC-seq data using MACS3 with ATAC-specific parameters. Use when identifying open chromatin regions from aligned ATAC-seq BAM files, different from ChIP-seq peak calling.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Quality control metrics for ATAC-seq data including fragment size distribution, TSS enrichment, FRiP, and library complexity. Use when assessing ATAC-seq library quality before or after peak calling to identify problematic samples.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. Use when comparing chromatin accessibility between treatment groups, cell types, or developmental stages in ATAC-seq experiments.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. Use when identifying TF occupancy patterns within accessible regions, as TF binding protects DNA from Tn5 cutting.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Analyze transcription factor motif accessibility variability using chromVAR. Use when identifying which TF motifs show variable accessibility across samples or conditions in ATAC-seq data.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Extract nucleosome positions from ATAC-seq data using NucleoATAC, ATACseqQC, and fragment analysis. Use when analyzing chromatin organization, identifying nucleosome-free regions at promoters, or characterizing nucleosome occupancy patterns from ATAC-seq fragment size distributions.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Guppy is deprecated; use Dorado for all new analyses.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Skill "bio-batch-downloads" from FreedomIntelligence/OpenClaw-Medical-Skills, covering copyright notice, copyright (c) 2026 md babu mia, phd, all rights reserved, this code is proprietary and confidential and provenance: authenticated by md babu mia.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Process multiple sequence files in batch using Biopython. Use when working with many files, merging/splitting sequences, or automating file operations across directories.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Skill "bio-bedgraph-handling" from FreedomIntelligence/OpenClaw-Medical-Skills, covering copyright notice, copyright (c) 2026 md babu mia, phd, all rights reserved, this code is proprietary and confidential and provenance: authenticated by md babu mia.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Skill "bio-blast-searches" from FreedomIntelligence/OpenClaw-Medical-Skills, covering copyright notice, copyright (c) 2026 md babu mia, phd, all rights reserved, this code is proprietary and confidential and provenance: authenticated by md babu mia.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Test whether two traits share a causal variant at a genomic locus using Bayesian colocalization with coloc. Computes posterior probabilities for shared vs distinct causal variants between GWAS and eQTL signals. Use when determining if a GWAS signal and an eQTL share the same causal variant.
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Identify likely causal variants within GWAS loci using SuSiE for sum of single effects regression and FINEMAP for shotgun stochastic search. Computes posterior inclusion probabilities and credible sets to prioritize variants for functional follow-up. Use when narrowing GWAS association signals to candidate causal…
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. Tests whether gene expression, methylation, or other molecular phenotypes mediate the effect of genetic variants on disease. Use when testing whether a molecular phenotype mediates the…
FreedomIntelligence/OpenClaw-Medical-Skills
Skill Claude CodeCodex
Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR. Implements IVW, MR-Egger, weighted median, and MR-PRESSO methods for robust causal inference from GWAS summary statistics. Use when testing whether an exposure causally affects an outcome using…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: