bio-single-cell

bio-single-cell is a skill for Claude Code, Codex from frumu-ai/tandem. It costs 153 tokens per session (1,047 once invoked), scanned A, original, no licence file.

A toolkit and workflow for analysing single-cell biological data with scvi-tools and the scverse ecosystem. It covers methods for combining datasets, analysing gene activity, and working with multiple measurement types.

In plain words
What is it for?
Use it for scVI/scANVI data integration and batch correction, PeakVI ATAC-seq analysis, totalVI CITE-seq analysis, and MultiVI multiome RNA-plus-ATAC analysis.
Why use it?
It helps researchers handle differences between experiments and analyse data that measures genes, chromatin, proteins, or several of these together.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it for scVI/scANVI data integration and batch correction, PeakVI ATAC-seq analysis, totalVI CITE-seq analysis, and MultiVI multiome RNA-plus-ATAC analysis.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/frumu-ai/tandem/bio-single-cell
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add frumu-ai/tandem --skill bio-single-cell
Clone the repo
git clone --depth 1 https://github.com/frumu-ai/tandem

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bio-single-cell

README.md
[![agentmods](https://agentmods.dev/badge/skills/frumu-ai/tandem/bio-single-cell/github.svg)](https://agentmods.dev/skills/frumu-ai/tandem/bio-single-cell)
Your own site
<a href="https://agentmods.dev/skills/frumu-ai/tandem/bio-single-cell"><img src="https://agentmods.dev/badge/skills/frumu-ai/tandem/bio-single-cell/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bio-single-cell

Your own site · 80×15
<a href="https://agentmods.dev/skills/frumu-ai/tandem/bio-single-cell"><img src="https://agentmods.dev/badge/skills/frumu-ai/tandem/bio-single-cell.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 153 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,047 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00153 $0.01047
Opus 5 $0.00077 $0.00524
Sonnet 5 $0.00031 $0.00209
Haiku 4.5 $0.00015 $0.00105

Measured 10d ago against content hash 45a4c31b2981, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

bio-single-cell scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

apps/tandem-desktop/src-tauri/resources/skill-templates/bio-single-cell/SKILL.md · 80 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 10d ago First seen · 80 lines · 153 tokens per session scan A 45a4c31b2981

Subscribe to this mod's changes

bio-single-cell is a skill published in the GitHub repository frumu-ai/tandem (119 stars, last pushed 3d ago), with no licence file. It adds 153 tokens to every session and 1,047 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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