cns-visualization

cns-visualization is a skill for Claude Code from GGbond-bo/MemOmics-Agent. It costs 32 tokens per session (1,541 once invoked), scanned A, original, MIT.

A template for producing several scientific charts from single-cell data, including cell maps, gene-expression summaries, distributions, heatmaps, and flow diagrams. It is aimed at presenting results for publication.

In plain words
What is it for?
Use it to create UMAP plots, dot plots, violin plots, heatmaps, and Sankey diagrams for cell-type and gene-expression analysis.
Why use it?
It groups common views of single-cell results into one defined sequence instead of leaving the reporting format open-ended.

Skill for Claude Code

Written for Claude Code: when-to-use in frontmatter.

Good fit Use it to create UMAP plots, dot plots, violin plots, heatmaps, and Sankey diagrams for cell-type and gene-expression analysis.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/ggbond-bo/memomics-agent/cns-visualization
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add GGbond-bo/MemOmics-Agent --skill cns-visualization
Clone the repo
git clone --depth 1 https://github.com/GGbond-bo/MemOmics-Agent

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for cns-visualization

README.md
[![agentmods](https://agentmods.dev/badge/skills/ggbond-bo/memomics-agent/cns-visualization/github.svg)](https://agentmods.dev/skills/ggbond-bo/memomics-agent/cns-visualization)
Your own site
<a href="https://agentmods.dev/skills/ggbond-bo/memomics-agent/cns-visualization"><img src="https://agentmods.dev/badge/skills/ggbond-bo/memomics-agent/cns-visualization/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for cns-visualization

Your own site · 80×15
<a href="https://agentmods.dev/skills/ggbond-bo/memomics-agent/cns-visualization"><img src="https://agentmods.dev/badge/skills/ggbond-bo/memomics-agent/cns-visualization.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 32 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,541 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00032 $0.01541
Opus 5 $0.00016 $0.00771
Sonnet 5 $0.00006 $0.00308
Haiku 4.5 $0.00003 $0.00154

Measured 9d ago against content hash eb3e0cddb387, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

cns-visualization scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/run.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

hermes_home/skills/bioinformatics/cns-visualization/SKILL.md · 140 lines

How it starts

The opening of the file, as written. The whole thing — 140 lines — stays where its author put it; the contents beside it link to each section on GitHub.

CNS级可视化

Nature/Cell/Science级别出图模板: UMAP+DotPlot+Violin+Heatmap+Sankey

规则N: 运行记录只是参考,不能跳过审查

  • skill_evolution(action="query_logs") 返回的历史运行日志仅供参数参考
  • 即使有 quality_score=9.0 的历史日志,仍必须执行 rail_review(pre)、debate_analysis、rail_review(post)
  • 禁止因"之前跑过"而跳过任何审查步骤
  • 禁止直接用历史日志里的脚本运行而不经本次审查
  • 运行日志是"参考"不是"免审凭证"

分析步骤:

  • UMAP FeaturePlot (Nature): Unified palette + hi-res
  • DotPlot: Marker genes across celltypes
  • ViolinPlot: Expression distribution + stats
  • Heatmap: Top DEG + annotation bars
  • Sankey/Alluvial: Cell type flow diagram

触发提示: "生成CNS级可视化图表"

When to Use

当你需要 CNS级可视化 时触发

Pipeline

  1. UMAP FeaturePlot (Nature)
    • Unified palette + hi-res
    • Tool: terminal
  2. DotPlot
    • Marker genes across celltypes
    • Tool: terminal
  3. ViolinPlot
    • Expression distribution + stats
    • Tool: terminal
  4. Heatmap
    • Top DEG + annotation bars
    • Tool: terminal
  5. Sankey/Alluvial
    • Cell type flow diagram
    • Tool: terminal

Parameters

Parameter Default Notes
steps UMAP FeaturePlot (Nature) -> DotPlot -> ViolinPlot -> Heatmap -> Sankey/Alluvial

Parameter Adaptation: Adjust parameters based on tissue quality, species, and condition. Literature values take priority, then official defaults, then tissue-specific adjustments.

Proven Scripts

Scripts that have been successfully executed and passed analysis review. These are automatically saved after successful runs.

Species Tissue Condition Date Score
(none yet)

| human | skeletal_muscle | aging | 2026-08-17 | plot_umap_annotation.R | - | - | | | human | skeletal_muscle | aging | 2026-08-20 | fig_C1_AMPK_violin_4sub.py | - | - | | | human | skeletal_muscle | aging | 2026-08-20 | fig_C1_AMPK_violin_4sub.py | - | - | | | human | skeletal_muscle | aging | 2026-08-20 | fig_C1_AMPK_violin_4sub.py | - | - | | | human | skeletal_muscle | aging | 2026-08-20 | fig_C1_5sub_rawp_effsize.py | - | - | | | human | skeletal_muscle | aging | 2026-08-21 | fig_C1_5sub_vs_pure_v2.py | - | - | |

Read the full file on GitHub · 140 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 140 lines · 32 tokens per session scan A eb3e0cddb387

Subscribe to this mod's changes

cns-visualization is a skill published in the GitHub repository GGbond-bo/MemOmics-Agent (19 stars, last pushed 2d ago), licensed MIT. It adds 32 tokens to every session and 1,541 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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