quickgo-database

quickgo-database is a skill for Claude Code, Codex from google-deepmind/science-skills. It costs 83 tokens per session (1,437 once invoked), scanned A, original, Apache-2.0.

A command-line connection to QuickGO, a web service for Gene Ontology data, and ECO, which describes the evidence behind biological annotations.

In plain words
What is it for?
Use it to link genes to biological processes, molecular functions, or cell parts, find genes associated with a pathway or GO term, and explore annotation evidence.
Why use it?
It removes the need to manually search gene-function relationships and navigate the Gene Ontology hierarchy.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to link genes to biological processes, molecular functions, or cell parts, find genes associated with a pathway or GO term, and explore annotation evidence.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/google-deepmind/science-skills/quickgo_database
About the project

Science Skills is a collection of add-ons that give AI agents structured instructions, scripts, and references for scientific research, including genomics, structural biology, cheminformatics, and literature search. Researchers use it to guide agents through specialized scientific tasks with information from databases and tools such as AlphaGenome, AFDB, and UniProt. The catalogue entries are individual skills from this collection.

google-deepmind/science-skills · 3,315 stars · on GitHub · antigravity.google

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add google-deepmind/science-skills --skill quickgo_database
Clone the repo
git clone --depth 1 https://github.com/google-deepmind/science-skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for quickgo-database

README.md
[![agentmods](https://agentmods.dev/badge/skills/google-deepmind/science-skills/quickgo_database/github.svg)](https://agentmods.dev/skills/google-deepmind/science-skills/quickgo_database)
Your own site
<a href="https://agentmods.dev/skills/google-deepmind/science-skills/quickgo_database"><img src="https://agentmods.dev/badge/skills/google-deepmind/science-skills/quickgo_database/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for quickgo-database

Your own site · 80×15
<a href="https://agentmods.dev/skills/google-deepmind/science-skills/quickgo_database"><img src="https://agentmods.dev/badge/skills/google-deepmind/science-skills/quickgo_database.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 83 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,437 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00083 $0.01437
Opus 5.5 $0.00033 $0.00575
Sonnet 5.5 $0.00017 $0.00287
Haiku 4.5 $0.00008 $0.00144

Measured 1mo ago against content hash a835ba855337, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

quickgo-database scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/quickgo_tool.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/quickgo_database/SKILL.md · 125 lines

How it starts

The opening of the file, as written. The whole thing — 125 lines — stays where its author put it; the contents beside it link to each section on GitHub.

QuickGO Database Skill

GO (Gene Ontology) annotations are one of the main ways to label a gene's function. QuickGO is a fast, web-based browser for the GO and Evidence & Conclusion Ontology (ECO), maintained by the Gene Ontology Annotation (GOA) group at EMBL-EBI.

It provides a centralised resource to explore the functional attributes of gene products (proteins, RNA, and complexes). It is a primary tool for functional annotation mapping since it allows you to link a gene (e.g., USH2A) to its specific biological processes (e.g. sensory perception of light stimulus), molecular functions, and cellular components.

Prerequisites

  1. uv: Read the uv skill and follow its Setup instructions to ensure uv is installed and on PATH.
  2. User Notification: If .licenses/quickgo_database_LICENSE.txt does not already exist in the workspace root directory then (1) prominently notify the user to check the terms at https://www.ebi.ac.uk/QuickGO/ and https://www.ebi.ac.uk/QuickGO/api/index.html, then (2) create the file recording the notification text and timestamp.

Usage

This skill provides a Python CLI wrapper scripts/quickgo_tool.py that queries the QuickGO REST API. It handles formatting the requests, respecting rate limits, and safely storing the potentially large JSON responses.

Core Rules

  • Use the Wrapper: ALWAYS execute the provided helper scripts to query the database rather than accessing the database directly. The scripts automatically enforce the required rate limit gracefully.
  • Pagination & Limits: Restrict endpoints to a maximum of 100 results per page using --limit 100 and the --page parameter for larger datasets.
  • Output Files: Always use the --output flag to save responses to a file incrementally or parse via jq.
  • Evidence Codes: Prioritize experimental evidence (ECO:0000269) over electronic (ECO:0000501) to avoid noisy predictions.
  • Taxon Filtering: Use --taxonId 9606 to restrict results to Human when analysing clinical or human genomic data.
  • Notification: If this skill is used, ensure this is mentioned in the output.

Read the full file on GitHub · 125 lines

Files

What ships with it

6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 125 lines · 83 tokens per session scan A a835ba855337

Subscribe to this mod's changes

quickgo-database is a skill published in the GitHub repository google-deepmind/science-skills (3,315 stars, last pushed 7d ago), licensed Apache-2.0. It adds 83 tokens to every session and 1,437 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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