xrd-spectra-simulation

xrd-spectra-simulation is a skill for Claude Code, Codex from InternScience/ChemClaw. It costs 24 tokens per session (360 once invoked), scanned A, original, MIT.

A crystal-structure simulator that creates an X-ray diffraction spectrum from a CIF file using copper K-alpha radiation by default. A CIF file stores the positions and unit-cell information of atoms in a crystal.

In plain words
What is it for?
Use it to turn a CIF structure into a publication-ready PNG XRD plot, using the default copper source or options such as molybdenum radiation.
Why use it?
It produces a calculated diffraction pattern without first measuring the sample. The wavelength can be changed when another X-ray source is needed.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to turn a CIF structure into a publication-ready PNG XRD…

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/internscience/chemclaw/xrd-spectra-simulation
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add InternScience/ChemClaw --skill xrd-spectra-simulation
Clone the repo
git clone --depth 1 https://github.com/InternScience/ChemClaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for xrd-spectra-simulation

README.md
[![agentmods](https://agentmods.dev/badge/skills/internscience/chemclaw/xrd-spectra-simulation.svg)](https://agentmods.dev/skills/internscience/chemclaw/xrd-spectra-simulation)
Your own site
<a href="https://agentmods.dev/skills/internscience/chemclaw/xrd-spectra-simulation"><img src="https://agentmods.dev/badge/skills/internscience/chemclaw/xrd-spectra-simulation.svg" alt="Measured on agentmods" height="20"></a>
Per session 24 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 360 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00024 $0.00360
Opus 5 $0.00012 $0.00180
Sonnet 5 $0.00005 $0.00072
Haiku 4.5 $0.00002 $0.00036

Measured 7d ago against content hash 3222096a8d61, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

xrd-spectra-simulation scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (xrd_spectra_simulation.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/xrd-spectra-simulation/SKILL.md · 54 lines

What it actually says

XRD Spectrum Simulation Skill

When to use this

Use this skill when the user provides a .cif structure file and wants:

  • Simulated XRD pattern (Cu Kα by default)
  • Publication-ready PNG plot

Inputs

  • .cif file path (user provides crystal structure)

Outputs

  • /tmp/chemclaw/xrd_spectrum.png — XRD pattern plot

New environment (from zero)

conda create -n spec python=3.12 -y
conda activate spec
cd xrd-spectra-simulation
pip install -r requirements.txt

python xrd_spectra_simulation.py example/1100157.cif
  • 仓库内附范例 example/1100157.cif 可直接测试。

How to use

cd xrd-spectra-simulation
python xrd_spectra_simulation.py example/1100157.cif
python xrd_spectra_simulation.py path/to/structure.cif --output /tmp/chemclaw/my_xrd.png

Optional

cd xrd-spectra-simulation
python xrd_spectra_simulation.py structure.cif --wavelength MoKa

Dependencies (requirements.txt)

  • pymatgen
  • matplotlib

Notes

  • Uses pymatgen XRDCalculator
  • Default: Cu Kα radiation
  • Available: CuKa, MoKa, CrKa, FeKa, CoKa, AgKa, etc.
Files

What ships with it

4 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 7d ago First seen · 54 lines · 24 tokens per session scan A 3222096a8d61

Subscribe to this mod's changes

xrd-spectra-simulation is a skill published in the GitHub repository InternScience/ChemClaw (52 stars, last pushed 5mo ago), licensed MIT. It adds 24 tokens to every session and 360 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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