Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add InternScience/MolClaw --skill molclaw-protein-metricsgit clone --depth 1 https://github.com/InternScience/MolClawWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/internscience/molclaw/molclaw-protein-metrics)<a href="https://agentmods.dev/skills/internscience/molclaw/molclaw-protein-metrics"><img src="https://agentmods.dev/badge/skills/internscience/molclaw/molclaw-protein-metrics/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/internscience/molclaw/molclaw-protein-metrics"><img src="https://agentmods.dev/badge/skills/internscience/molclaw/molclaw-protein-metrics.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00121 | $0.00356 |
| Opus 5.5 | $0.00048 | $0.00142 |
| Sonnet 5.5 | $0.00024 | $0.00071 |
| Haiku 4.5 | $0.00012 | $0.00036 |
Grade A, and why
molclaw-protein-metrics scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
What it actually says
Protein Metrics
Invocation
Use the exact tool name and parameter schema exposed by the current harness.
Tools
calculate_protein_sequence_properties: acceptssequenceand returns length, molecular weight, pI, extinction coefficients, stability, aliphatic index, hydrophilicity, and amino-acid composition.calculate_pdb_basic_info: acceptspdb_file_pathand returns atom, residue, chain, element, and approximate molecular-weight statistics.calculate_pdb_structural_geometry: acceptspdb_file_pathand returns coordinate ranges, centroid, radius of gyration, and maximum C-alpha distance.calculate_pdb_quality_metrics: acceptspdb_file_pathand returns average B-factor, occupancy, and residues per chain.calculate_pdb_composition_info: acceptspdb_file_pathand returns atom-name, residue-name, and per-chain composition counts.
Use server-visible paths for PDB inputs. Check status and msg before using returned metrics as evidence.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 1mo ago First seen · 24 lines · 121 tokens per session scan A 7554431e5484
molclaw-protein-metrics is a skill published in the GitHub repository InternScience/MolClaw (38 stars, last pushed 1mo ago), licensed MIT. It adds 121 tokens to every session and 356 once invoked, about $0.0005 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-25.
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