research-intake

research-intake is a skill for Claude Code from Jeffallan/writing-with-agents. It costs 37 tokens per session (1,965 once invoked), scanned A, original, MIT.

A research guide for collecting and mapping information from notes, documents, prior research, and web links. It creates an inventory of what the source material contains, what is missing, and how the pieces connect.

In plain words
What is it for?
Use it to inspect an Obsidian vault or document collection, organize a research corpus, and identify gaps that need more investigation.
Why use it?
It turns scattered source material into a clear research map before writing begins.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin. Also seen: names the AskUserQuestion tool.

Part of the writing-with-agents plugin — 10 skills shipped together

Good fit Use it to inspect an Obsidian vault or document collection, organize a research corpus, and identify gaps that need more investigation.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/jeffallan/writing-with-agents/research-intake
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Jeffallan/writing-with-agents --skill research-intake
Clone the repo
git clone --depth 1 https://github.com/Jeffallan/writing-with-agents

Made for: Claude Code.

Or install writing-with-agents, the plugin that ships this one along with the rest of its 10 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for research-intake

README.md
[![agentmods](https://agentmods.dev/badge/skills/jeffallan/writing-with-agents/research-intake/github.svg)](https://agentmods.dev/skills/jeffallan/writing-with-agents/research-intake)
Your own site
<a href="https://agentmods.dev/skills/jeffallan/writing-with-agents/research-intake"><img src="https://agentmods.dev/badge/skills/jeffallan/writing-with-agents/research-intake/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for research-intake

Your own site · 80×15
<a href="https://agentmods.dev/skills/jeffallan/writing-with-agents/research-intake"><img src="https://agentmods.dev/badge/skills/jeffallan/writing-with-agents/research-intake.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 37 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,965 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00037 $0.01965
Opus 5 $0.00018 $0.00983
Sonnet 5 $0.00007 $0.00393
Haiku 4.5 $0.00004 $0.00197

Measured 13d ago against content hash e6abdf4676c0, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

research-intake scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 13d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/research-intake/SKILL.md · 128 lines

How it starts

The opening of the file, as written. The whole thing — 128 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Role Definition

The Research Intake specialist traverses, indexes, and maps source material into a structured knowledge map before any content creation begins.

Lead: AI traverses and indexes source material, builds the knowledge map, identifies gaps. Support: Human steers gap-filling priorities, validates the map, and seeds with context about what matters.

This skill handles Obsidian vault files, markdown notes, reference documents, prior research, and web URLs. It assumes arbitrary nested file and folder structures with no predetermined naming conventions or organizational schemes. The skill does not assume Zettelkasten, PARA, or any other specific note-taking methodology.

The knowledge map is a structured inventory of what the research corpus contains, what it lacks, and how its pieces connect. It is not an outline or a content plan -- those belong to downstream skills.

When to Use This Skill

  • Starting a writing project and need to understand what material already exists
  • Ingesting an Obsidian vault, folder of markdown notes, or collection of reference documents
  • Building a research corpus from scattered sources before content planning
  • Identifying what gaps exist in existing research before generating new material
  • Preparing source material for handoff to the content-strategist or madman phase
  • Auditing a knowledge base to understand coverage and depth across topics
  • Onboarding to a new domain where prior research exists but is unorganized
  • Combining multiple research sources into a unified understanding
  • Returning to a dormant project and need to rediscover what research already exists
  • Validating that source material has enough depth to support a planned content calendar
  • Cross-referencing claims across multiple documents to find contradictions or reinforcement
  • Preparing for a content audit where you need to map what topics are already covered and to what depth
  • Triaging a large collection of notes to determine which are relevant to a specific writing project

Read the full file on GitHub · 128 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 13d ago First seen · 128 lines · 37 tokens per session scan A e6abdf4676c0

Subscribe to this mod's changes

research-intake is a skill published in the GitHub repository Jeffallan/writing-with-agents (31 stars, last pushed 2mo ago), licensed MIT. It adds 37 tokens to every session and 1,965 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other skills, from other repositories

systematic-debugging

Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes.

obra/superpowers · 21 tokens

local-ai-agents

Build local-first AI agents that run entirely on a developer workstation with Microsoft Foundry Local and Qwen function-calling models. Covers Small Language Models (SLMs), the OpenAI-compatible local endpoint, sandboxed local tools, local RAG with Chroma, local MCP servers, hybrid cloud/local routing, and the…

microsoft/ai-agents-for-beginners · 200 tokens

next-cache-components-adoption

Turn on Cache Components in a Next.js app and resolve the blocking routes it surfaces. Use when the user wants to enable, adopt, or migrate to Cache Components, flip the cacheComponents flag, work through a flood of blocking-prerender / instant validation errors, run the cache-components-instant-false codemod, or…

vercel/next.js · 95 tokens

chat-pet-sprite-creation

Use when creating or changing VS Code chat pet sprite art, sprite sheets, state animations, eye treatments, Stable/Insiders variants, or pet transitions under src/vs/workbench/contrib/chat/browser/widget/media/chatPet.

microsoft/vscode · 53 tokens

cpu-profile-analysis

Analyze V8/Chrome CPU profiles (.cpuprofile) and DevTools trace files (Trace-.json). Use when: profiling performance, investigating slow functions, comparing code paths, finding bottlenecks, analyzing timeToRequest, understanding call trees from sampling profiler data, analyzing layout/paint/rendering, investigating…

microsoft/vscode · 71 tokens

insight-error-page

Write or audit an insight-kind error page for the Next.js dev overlay. Use when creating a new errors/ .mdx page, auditing an existing one, or checking that a page matches the framework fix cards. Covers page structure, title alignment, FixCard cards with Copy prompt button, code snippets, terminology verification…

vercel/next.js · 83 tokens