agentmods.dev

pyhealth

pyhealth is a skill for Claude Code from jimmc414/Kosmos. It costs 109 tokens per session (4,032 once invoked), scanned A, original, no licence file.

A toolkit for building machine-learning models with healthcare data, especially electronic health records, which are digital patient records. It covers clinical prediction tasks and medical coding systems such as ICD, NDC, and ATC.

In plain words
What is it for?
It helps develop, test, and deploy models for outcomes such as mortality, hospital readmission, and medication recommendations.
Why use it?
It provides common healthcare data and modeling workflows in one place instead of requiring each clinical prediction task to be built from the beginning.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin.

Part of the scientific-skills plugin — 119 skills shipped together

not rated 605repo +1 28d ago A scan 109 tokens no licence

Good fit It helps develop, test, and deploy models for outcomes such as mortality, hospital readmission, and medication recommendations.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/jimmc414/kosmos/pyhealth
View source ↗ jimmc414/Kosmos
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add jimmc414/Kosmos --skill pyhealth
Clone the repo
git clone --depth 1 https://github.com/jimmc414/Kosmos

Made for: Claude Code.

Or install scientific-skills, the plugin that ships this one along with the rest of its 119 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for pyhealth

README.md
[![agentmods](https://agentmods.dev/badge/skills/jimmc414/kosmos/pyhealth/github.svg)](https://agentmods.dev/skills/jimmc414/kosmos/pyhealth)
Your own site
<a href="https://agentmods.dev/skills/jimmc414/kosmos/pyhealth"><img src="https://agentmods.dev/badge/skills/jimmc414/kosmos/pyhealth/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for pyhealth

Your own site · 80×15
<a href="https://agentmods.dev/skills/jimmc414/kosmos/pyhealth"><img src="https://agentmods.dev/badge/skills/jimmc414/kosmos/pyhealth.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 109 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 4,032 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00109 $0.04032
Opus 5.5 $0.00044 $0.01613
Sonnet 5.5 $0.00022 $0.00806
Haiku 4.5 $0.00011 $0.00403

Measured 2mo ago against content hash 782127318c0c, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

pyhealth scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

kosmos-claude-scientific-skills/scientific-skills/pyhealth/SKILL.md · 486 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 486 lines · 109 tokens per session scan A 782127318c0c

Subscribe to this mod's changes

pyhealth is a skill published in the GitHub repository jimmc414/Kosmos (605 stars, last pushed 28d ago), with no licence file. It adds 109 tokens to every session and 4,032 once invoked, about $0.0004 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

Data and AIScientific
Related

pyhealth compared with skills from other repositories

pyhealth next to 6 skills from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
pyhealthjimmc414/KosmosSkill60528d agononeA109Claude Code
arboretoK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA55Claude Code, Codex
deepspot-mK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA70Claude Code
torchdrugK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA64Claude Code
pyhealthK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA84Claude Code, Codex
nemo-mbridge-perf-expert-parallel-overlapNVIDIA/skillsSkill3.9kyesterdayApache-2.0A56Claude Code
ml-training-recipesOrchestra-Research/AI-Research-SKILLsSkill14k27d agoMITA88Claude Code