bioinformatics

bioinformatics is a skill for Claude Code, Codex from johnson7788/MultiUserClaw. It costs 55 tokens per session (3,396 once invoked), scanned B, a copy of bioinformatics, MIT.

A gateway to hundreds of computational-biology guides and runnable pipelines for analysing genes, sequencing data, proteins, and other biological data.

In plain words
What is it for?
Genomics, transcriptomics, single-cell analysis, variant calling, pharmacogenomics, metagenomics, phylogenetics, and protein-structure work.
Why use it?
It fetches only the domain-specific material needed instead of bundling hundreds of separate reference skills.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Genomics, transcriptomics, single-cell analysis, variant calling, pharmacogenomics, metagenomics, phylogenetics, and protein-structure work.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/johnson7788/multiuserclaw/bioinformatics
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add johnson7788/MultiUserClaw --skill bioinformatics
Clone the repo
git clone --depth 1 https://github.com/johnson7788/MultiUserClaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bioinformatics

README.md
[![agentmods](https://agentmods.dev/badge/skills/johnson7788/multiuserclaw/bioinformatics/github.svg)](https://agentmods.dev/skills/johnson7788/multiuserclaw/bioinformatics)
Your own site
<a href="https://agentmods.dev/skills/johnson7788/multiuserclaw/bioinformatics"><img src="https://agentmods.dev/badge/skills/johnson7788/multiuserclaw/bioinformatics/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bioinformatics

Your own site · 80×15
<a href="https://agentmods.dev/skills/johnson7788/multiuserclaw/bioinformatics"><img src="https://agentmods.dev/badge/skills/johnson7788/multiuserclaw/bioinformatics.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 55 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 3,396 The whole file, excluding the scripts and references it only reads on demand.
Security scan B 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin 94% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00055 $0.03396
Opus 5.5 $0.00022 $0.01358
Sonnet 5.5 $0.00011 $0.00679
Haiku 4.5 $0.00006 $0.00340

Measured 1mo ago against content hash 36ae22f7783a, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade B, and why

bioinformatics scanned grade B with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Asks for rootmediumPrivilege escalation

A mod that escalates privileges can change anything on the machine, not only the project.

sudo apt install samtools bcftools ncbi-blast+ minimap2 bedtools
Origin

This is a copy

94% identical to bioinformatics — 12 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

hermes-agent/optional-skills/research/bioinformatics/SKILL.md · 236 lines

How it starts

The opening of the file, as written. The whole thing — 236 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Bioinformatics Skills Gateway

Use when asked about bioinformatics, genomics, sequencing, variant calling, gene expression, single-cell analysis, protein structure, pharmacogenomics, metagenomics, phylogenetics, or any computational biology task.

This skill is a gateway to two open-source bioinformatics skill libraries. Instead of bundling hundreds of domain-specific skills, it indexes them and fetches what you need on demand.

Sources

◆ bioSkills — 385 reference skills (code patterns, parameter guides, decision trees) Repo: https://github.com/GPTomics/bioSkills Format: SKILL.md per topic with code examples. Python/R/CLI.

◆ ClawBio — 33 runnable pipeline skills (executable scripts, reproducibility bundles) Repo: https://github.com/ClawBio/ClawBio Format: Python scripts with demos. Each analysis exports report.md + commands.sh + environment.yml.

How to fetch and use a skill

  1. Identify the domain and skill name from the index below.
  2. Clone the relevant repo (shallow clone to save time):
    # bioSkills (reference material)
    git clone --depth 1 https://github.com/GPTomics/bioSkills.git /tmp/bioSkills
    
    # ClawBio (runnable pipelines)
    git clone --depth 1 https://github.com/ClawBio/ClawBio.git /tmp/ClawBio
    
  3. Read the specific skill:
    # bioSkills — each skill is at: <category>/<skill-name>/SKILL.md
    cat /tmp/bioSkills/variant-calling/gatk-variant-calling/SKILL.md
    
    # ClawBio — each skill is at: skills/<skill-name>/
    cat /tmp/ClawBio/skills/pharmgx-reporter/README.md
    
  4. Follow the fetched skill as reference material. These are NOT Hermes-format skills — treat them as expert domain guides. They contain correct parameters, proper tool flags, and validated pipelines.

Skill Index by Domain

Sequence Fundamentals

bioSkills: sequence-io/ — read-sequences, write-sequences, format-conversion, batch-processing, compressed-files, fastq-quality, filter-sequences, paired-end-fastq, sequence-statistics sequence-manipulation/ — seq-objects, reverse-complement, transcription-translation, motif-search, codon-usage, sequence-properties, sequence-slicing ClawBio: seq-wrangler — Sequence QC, alignment, and BAM processing (wraps FastQC, BWA, SAMtools)

Read the full file on GitHub · 236 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 236 lines · 55 tokens per session scan B 36ae22f7783a

Subscribe to this mod's changes

bioinformatics is a skill published in the GitHub repository johnson7788/MultiUserClaw (327 stars, last pushed 2mo ago), licensed MIT. It adds 55 tokens to every session and 3,396 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it B with 1 finding (asks for root). It is 94% identical to bioinformatics, differing in 12 lines, and is treated as a copy.

Related

Other skills, from other repositories

instrument-data-to-allotrope

Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…

anthropics/knowledge-work-plugins · 123 tokens

matlab

Builds, reviews, migrates, and plans MATLAB or GNU Octave numerical workflows. Use for arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.

K-Dense-AI/scientific-agent-skills · 44 tokens

exploratory-data-analysis

Performs bounded, local exploratory analysis of explicitly supported scientific files. Supports redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits; outlier and transformation sensitivity; and rigorous EDA report scaffolds. Other domain…

K-Dense-AI/scientific-agent-skills · 83 tokens

phylogenetics

Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and FastTree approximate inference. Uses ETE3 for tree summaries and visualization. Applies to homologous nucleotide or protein sequences, microbial gene trees, protein…

K-Dense-AI/scientific-agent-skills · 71 tokens

research-engineer

An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology.

davila7/claude-code-templates · 43 tokens

presenting-conference-talks

Generates conference presentation slides (Beamer LaTeX PDF and editable PPTX) from a compiled paper with speaker notes and talk script. Use when preparing oral talks, spotlight presentations, or invited talks for ML and systems conferences.

Orchestra-Research/AI-Research-SKILLs · 53 tokens