jonasscheid/claude-nfcore-plugin

jonasscheid/claude-nfcore-plugin

Skill Claude CodeCodex

Part of nf-core

This skill should be used when the user asks about "nf-core conventions", "strict syntax", "naming conventions", "output patterns", "coding style", "best practices", "parameter naming", "channel naming", "process labels", or how to structure nf-core code correctly. Covers strict syntax rules (Q2 2026 deadline), output…

jonasscheid/claude-nfcore-plugin

Skill Claude CodeCodex

Part of nf-core

This skill should be used when the user asks to "create a module", "install module", "update module", "patch module", "lint module", "create subworkflow", "install subworkflow", "update subworkflow", or any nf-core modules or nf-core subworkflows operation.

jonasscheid/claude-nfcore-plugin

Skill Claude CodeCodex

Part of nf-core

This skill should be used when the user asks to "run tests", "write nf-test", "create test cases", "debug test failures", "update snapshots", "validate pipeline outputs", "run nf-test", or mentions nf-test, snapshot testing, stub runs, or pipeline-level testing.

jonasscheid/claude-nfcore-plugin

Skill Claude CodeCodex

Part of nf-core

This skill should be used when the user asks to "create pipeline", "lint pipeline", "build schema", "sync template", "release pipeline", "validate params", or any nf-core pipelines operation. Covers the full nf-core pipeline lifecycle including Nextflow strict syntax validation (Q2 2026 deadline).