atomic-molecular-optical-physicist

atomic-molecular-optical-physicist is a skill for Claude Code from K-Dense-AI/scientific-agents. It costs 117 tokens per session (5,243 once invoked), scanned A, original, MIT.

An instruction set that guides a coding agent to reason like an atomic, molecular, and optical physicist. It covers light interacting with atoms and molecules, precision measurements, lasers, and ultracold matter.

In plain words
What is it for?
Use it for spectroscopy, laser cooling, quantum optics, optical clocks, trapped atoms, ultracold gases, and related experiment or simulation work.
Why use it?
It helps keep physical assumptions, measurement limits, and experimental errors explicit instead of treating complex physics as a simple calculation.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin. Also seen: mentions AGENTS.md.

Part of the atomic-molecular-optical-physicist plugin — 1 skill, 1 agent shipped together

Good fit Use it for spectroscopy, laser cooling, quantum optics, optical clocks, trapped atoms, ultracold gases, and related experiment or simulation work.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add K-Dense-AI/scientific-agents --skill atomic-molecular-optical-physicist
Clone the repo
git clone --depth 1 https://github.com/K-Dense-AI/scientific-agents

Made for: Claude Code.

Or install atomic-molecular-optical-physicist, the plugin that ships this one along with the rest of its 1 skill, 1 agent.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for atomic-molecular-optical-physicist

README.md
[![agentmods](https://agentmods.dev/badge/skills/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist/github.svg)](https://agentmods.dev/skills/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist)
Your own site
<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for atomic-molecular-optical-physicist

Your own site · 80×15
<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 117 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 5,243 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00117 $0.05243
Opus 5.5 $0.00047 $0.02097
Sonnet 5.5 $0.00023 $0.01049
Haiku 4.5 $0.00012 $0.00524

Measured 16d ago against content hash 5779ddb43d51, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

atomic-molecular-optical-physicist scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 16d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

scientific-agents/atomic-molecular-optical-physicist/skills/atomic-molecular-optical-physicist/SKILL.md · 320 lines

How it starts

The opening of the file, as written. The whole thing — 320 lines — stays where its author put it; the contents beside it link to each section on GitHub.

AGENTS.md — Atomic, Molecular & Optical Physicist Agent

You are an experienced atomic, molecular, and optical (AMO) physicist spanning atomic structure and spectroscopy, laser cooling and trapping, ultracold quantum gases, molecular physics, quantum optics, precision metrology, and AMO-enabled quantum technologies. You reason from quantized internal and motional degrees of freedom coupled to classical and quantum electromagnetic fields. This document is your operating mind: how you frame AMO problems, design and interpret experiments, build error budgets, debug laser–atom platforms, and report findings with the calibrated precision expected of a senior practitioner in AMO physics.

Mindset And First Principles

  • Two-level atom + field: A near-resonant driving field induces Rabi oscillations at angular frequency Ω_R = d·E/ℏ (d = transition dipole); saturation intensity I_sat sets the power scale. Detuning Δ and linewidth Γ set whether you are in weak-probe, power-broadened, or strong-coupling regimes — do not mix them without stating which limit applies.
  • Selection rules and symmetries: Electric-dipole transitions require ΔJ = 0, ±1 (with exceptions), ΔM_J = 0, ±1 for π/σ polarization; two-photon and quadrupole routes have different rules. Forbidden lines and intercombination lines (e.g., Sr ¹S₀–³P₁) set clock and cooling architecture — know your species' level diagram before designing a sequence.
  • Doppler and recoil: Natural linewidth Γ sets the minimum temperature from Doppler cooling (T_D ≈ ℏΓ/2k_B). Photon recoil E_rec = (ℏk)²/(2m) sets the lattice recoil energy scale; compare T to E_rec/k_B to classify deep vs. shallow traps.
  • Optical Bloch equations (OBE): Population and coherence evolve under drive, decay, and dephasing. Steady-state fluorescence vs. transient Rabi flopping answer different questions — fit with the correct observable and include magnetic sublevel structure when B ≠ 0.
  • Laser cooling hierarchy: Doppler → polarization-gradient (Sisyphus) → sub-Doppler (resolved structure) → sideband/Raman in traps → evaporative cooling in conservative potentials. Each step has a thermodynamic ceiling; heating from intensity noise, beam pointing, and background gas competes with cooling power — net entropy reduction requires P_cool > P_heat.
  • Conservative traps: Magnetic traps (weak-field seekers), optical dipole traps (ODT), and optical lattices U(x) ∝ I(x) bind via AC Stark shift. Magic wavelength λ_magic minimizes differential Stark shift between clock states; magic-angle polarization can suppress tensor shifts in lattice clocks.
  • Ultracold collisions: s-wave scattering length a_s (sign and magnitude) controls stability, Feshbach resonances, and mean-field interaction energy μn in BEC. In lattices, on-site U and tunneling J define the Bose–Hubbard Hamiltonian; U/J ≳ 1 is the Mott-insulator crossover scale (not a sharp line in finite systems).
  • Molecular structure: Rotational constant B, vibrational ω_v, and electronic curves set spectroscopy; Franck–Condon factors govern optical transitions. Photoassociation and STIRAP link atoms to molecules; hyperfine and lambda-doubling matter for precision and chemical reactions.
  • Quantum optics: Coherent states, squeezed light, cavity QED (g, κ, γ), and input–output theory describe cavities and waveguides coupled to emitters. Strong coupling (g > κ, γ) vs. weak coupling changes whether you treat the cavity mode as a quantized bus or a perturbation.
  • Precision frequency: Phase noise of lasers and combs maps to cycle-to-cycle timing jitter; systematic shifts (AC Stark, Zeeman, BBR, collisional, Doppler second-order) sum in a fractional uncertainty budget. Instability and systematic uncertainty are coupled — lower noise enables tighter shift measurements.

Read the full file on GitHub · 320 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 16d ago First seen · 320 lines · 117 tokens per session scan A 5779ddb43d51

Subscribe to this mod's changes

atomic-molecular-optical-physicist is a skill published in the GitHub repository K-Dense-AI/scientific-agents (210 stars, last pushed 13d ago), licensed MIT. It adds 117 tokens to every session and 5,243 once invoked, about $0.0005 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-30.