What is sepsis-screening?

A sepsis-screening helper that calculates qSOFA, SOFA, and SIRS scores from a patient’s vital signs, laboratory results, diagnoses, and treatment records. Sepsis is a serious response to infection that can cause organ failure.

Use it when infection and possible sepsis are suspected, to review relevant criteria, assess risk, and check elements of the early sepsis treatment bundle.

It collects the measurements used by several screening systems and records the resulting risk assessment in one place.

sepsis-screening — Skill for Claude Code and Codex by langcare

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent

npx skills add langcare/langcare-mcp-fhir --skill sepsis-screening

Clone the repo

git clone --depth 1 https://github.com/langcare/langcare-mcp-fhir

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/skills/langcare/langcare-mcp-fhir/sepsis-screening/github.svg)](https://agentmods.dev/skills/langcare/langcare-mcp-fhir/sepsis-screening)

Your own site

<a href="https://agentmods.dev/skills/langcare/langcare-mcp-fhir/sepsis-screening"><img src="https://agentmods.dev/badge/skills/langcare/langcare-mcp-fhir/sepsis-screening/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/skills/langcare/langcare-mcp-fhir/sepsis-screening"><img src="https://agentmods.dev/badge/skills/langcare/langcare-mcp-fhir/sepsis-screening.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 105 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.

When invoked 3,776 The whole file, excluding the scripts and references it only reads on demand.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin original No closer match found in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.00105	$0.03776
Opus 5.5	$0.00042	$0.01510
Sonnet 5.5	$0.00021	$0.00755
Haiku 4.5	$0.00011	$0.00378

Measured 2mo ago against content hash 9c70775decef, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

sepsis-screening scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/core/clinical-decision-support/sepsis-screening/SKILL.md · 374 lines

How it starts

The opening of the file, as written. The whole thing — 374 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Sepsis Screening

Overview

Calculate qSOFA, SOFA, and SIRS scores from FHIR Observation and Condition resources. Pull vitals (temperature, heart rate, respiratory rate, blood pressure, SpO2) and labs (WBC, lactate, creatinine, bilirubin, platelets, PaO2/FiO2) to generate a comprehensive sepsis risk assessment. Create a ClinicalImpression resource documenting the findings. Evaluate compliance with Surviving Sepsis Campaign hour-1 bundle elements.

FHIR Resources Used

Resource	Purpose	Key Fields
Observation	Vitals and lab values	code, valueQuantity, effectiveDateTime, status
Condition	Active infections, comorbidities	code, clinicalStatus, onsetDateTime
Patient	Age, demographics	birthDate, gender
MedicationRequest	Vasopressor use, current antibiotics	medicationCodeableConcept, status, authoredOn
Procedure	Mechanical ventilation status	code, status, performedPeriod
ClinicalImpression	Output: sepsis risk assessment	status, description, finding, summary

Instructions

Step 1: Retrieve Patient Demographics

Tool: fhir_read
resourceType: "Patient"
id: "[patient-id]"

Extract birthDate (calculate age) and gender. Age modifies baseline risk interpretation.

Step 2: Pull Vital Signs (Last 24 Hours)

Retrieve each vital sign category using LOINC codes. Use _sort=-date&_count=5 to get recent trends.

Temperature:

Tool: fhir_search
resourceType: "Observation"
queryParams: "patient=[patient-id]&code=8310-5&_sort=-date&_count=5"

LOINC 8310-5 = Body temperature. Flag if >38.3C (100.9F) or <36.0C (96.8F).

Heart Rate:

Tool: fhir_search
resourceType: "Observation"
queryParams: "patient=[patient-id]&code=8867-4&_sort=-date&_count=5"

LOINC 8867-4 = Heart rate. Flag if >90 bpm (SIRS) or >100 bpm.

Respiratory Rate:

Tool: fhir_search
resourceType: "Observation"
queryParams: "patient=[patient-id]&code=9279-1&_sort=-date&_count=5"

LOINC 9279-1 = Respiratory rate. Flag if >=22 (qSOFA) or >20 (SIRS).

Read the full file on GitHub · 374 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

2mo ago First seen · 374 lines · 105 tokens per session scan A 9c70775decef

Subscribe to this mod's changes

sepsis-screening is a skill published in the GitHub repository langcare/langcare-mcp-fhir (71 stars, last pushed 6mo ago), licensed MIT. It adds 105 tokens to every session and 3,776 once invoked, about $0.0004 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Scientific

sepsis-screening next to 6 skills from other repositories
Mod	Type	Stars	Last push	Licence	Scan	Tokens	Works with
sepsis-screeninglangcare/langcare-mcp-fhir	Skill	71	6mo ago	MIT	A	105	Claude Code, Codex
instrument-data-to-allotropeanthropics/knowledge-work-plugins	Skill	35k	2d ago	Apache-2.0	A	123	Claude Code
exploratory-data-analysisK-Dense-AI/scientific-agent-skills	Skill	56k	4d ago	MIT	A	83	Claude Code
matlabK-Dense-AI/scientific-agent-skills	Skill	56k	4d ago	MIT	A	44	Claude Code
phylogeneticsK-Dense-AI/scientific-agent-skills	Skill	56k	4d ago	MIT	A	71	Claude Code, Codex
research-engineerdavila7/claude-code-templates	Skill	33k	yesterday	MIT	A	43	Claude Code, Codex
mapping-to-snomedmaziyarpanahi/openmed	Skill	5.8k	yesterday	Apache-2.0	A	205	Claude Code