r-dev-docs

r-dev-docs is a skill for Claude Code, Codex from LeoLin990405/r-analytics-skill. It costs 25 tokens per session (568 once invoked), scanned A, original, MIT.

A set of R tools for writing package documentation and publishing it as a website. It includes pkgdown for package sites, roxygen2 for documentation written beside code, and R Markdown vignettes for tutorials.

In plain words
What is it for?
Use it to generate function reference pages, package home pages, articles, news pages, examples, and tutorial documents.
Why use it?
It keeps reference pages, tutorials, navigation, and package documentation organized instead of maintaining them as disconnected files.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/leolin990405/r-analytics-skill/r-dev-docs
Any agent
npx skills add LeoLin990405/r-analytics-skill --skill r-dev-docs
Clone the repo
git clone --depth 1 https://github.com/LeoLin990405/r-analytics-skill

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for r-dev-docs

README.md
[![agentmods](https://agentmods.dev/badge/skills/leolin990405/r-analytics-skill/r-dev-docs.svg)](https://agentmods.dev/skills/leolin990405/r-analytics-skill/r-dev-docs)
Your own site
<a href="https://agentmods.dev/skills/leolin990405/r-analytics-skill/r-dev-docs"><img src="https://agentmods.dev/badge/skills/leolin990405/r-analytics-skill/r-dev-docs.svg" alt="Measured on agentmods" height="20"></a>
Per session 25 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 568 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00025 $0.00568
Opus 5 $0.00013 $0.00284
Sonnet 5 $0.00005 $0.00114
Haiku 4.5 $0.00003 $0.00057

Measured 4d ago against content hash bb220dc16aa7, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

r-dev-docs scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

sub-skills/r-dev/r-dev-docs/SKILL.md · 117 lines

What it actually says

R Documentation

Package documentation and websites.

pkgdown

library(pkgdown)

# Build site
build_site()

# Components
build_home()
build_reference()
build_articles()
build_news()

# Preview
preview_site()

_pkgdown.yml

url: https://mypackage.github.io/mypackage

template:
  bootstrap: 5
  bootswatch: flatly

navbar:
  structure:
    left: [intro, reference, articles]
    right: [search, github]
  components:
    articles:
      text: Articles
      menu:
        - text: Getting Started
          href: articles/intro.html
        - text: Advanced Usage
          href: articles/advanced.html

reference:
  - title: Data Manipulation
    contents:
      - filter_data
      - transform_data
  - title: Visualization
    contents:
      - starts_with("plot_")

articles:
  - title: Tutorials
    navbar: ~
    contents:
      - intro
      - advanced

Vignettes

# Create vignette
usethis::use_vignette("intro")

# Vignette header
---
title: "Introduction to mypackage"
output: rmarkdown::html_vignette
vignette: >
  %\VignetteIndexEntry{Introduction to mypackage}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
---

roxygen2 Tags

#' @title Function Title
#' @description Detailed description
#' @details Additional details
#' @param x Parameter description
#' @return Return value description
#' @export
#' @examples
#' \dontrun{
#'   slow_example()
#' }
#' @family related functions
#' @seealso \code{\link{other_function}}
#' @references Paper citation
#' @keywords internal
#' @noRd

README.Rmd

# Create
usethis::use_readme_rmd()

# Build
devtools::build_readme()

# Badge examples
[![R-CMD-check](https://github.com/user/repo/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/user/repo/actions)
[![Codecov](https://codecov.io/gh/user/repo/branch/main/graph/badge.svg)](https://codecov.io/gh/user/repo)
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago First seen · 117 lines · 25 tokens per session scan A bb220dc16aa7

Subscribe to this mod's changes

r-dev-docs is a skill published in the GitHub repository LeoLin990405/r-analytics-skill (5 stars, last pushed 5mo ago), licensed MIT. It adds 25 tokens to every session and 568 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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