qinyan-nature-figures

qinyan-nature-figures is a skill for Codex from LeonChaoX/qinyan-academic-skills. It costs 164 tokens per session (1,253 once invoked), scanned A, original, MIT.

A skill for designing, coding, checking, and exporting publication-ready scientific figures from data or existing artwork.

In plain words
What is it for?
Use it to plan multi-panel figures, choose chart types, write Python or R plotting code, create mechanism diagrams, write captions, and export SVG, PDF, TIFF, or PNG files.
Why use it?
It helps ensure that charts show the intended evidence clearly and retain accurate labels, statistics, colours, sizing, and source information.

Skill for Codex

Written for Codex: agents/openai.yaml present.

Good fit Use it to plan multi-panel figures, choose chart types, write Python or R plotting code, create mechanism diagrams, write captions, and export SVG, PDF, TIFF, or PNG files.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/leonchaox/qinyan-academic-skills/qinyan-nature-figures
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add LeonChaoX/qinyan-academic-skills --skill qinyan-nature-figures
Clone the repo
git clone --depth 1 https://github.com/LeonChaoX/qinyan-academic-skills

Made for: Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for qinyan-nature-figures

README.md
[![agentmods](https://agentmods.dev/badge/skills/leonchaox/qinyan-academic-skills/qinyan-nature-figures/github.svg)](https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/qinyan-nature-figures)
Your own site
<a href="https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/qinyan-nature-figures"><img src="https://agentmods.dev/badge/skills/leonchaox/qinyan-academic-skills/qinyan-nature-figures/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for qinyan-nature-figures

Your own site · 80×15
<a href="https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/qinyan-nature-figures"><img src="https://agentmods.dev/badge/skills/leonchaox/qinyan-academic-skills/qinyan-nature-figures.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 164 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,253 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00164 $0.01253
Opus 5 $0.00082 $0.00626
Sonnet 5 $0.00033 $0.00251
Haiku 4.5 $0.00016 $0.00125

Measured 9d ago against content hash fc629ded3102, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

qinyan-nature-figures scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/figure_preflight.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/沁言学术skills/qinyan-nature-figures/SKILL.md · 90 lines

How it starts

The opening of the file, as written. The whole thing — 90 lines — stays where its author put it; the contents beside it link to each section on GitHub.

沁言 Nature 科研绘图

先定义图要证明什么,再决定画什么。期刊级图件是证据结构、视觉层级、数据诚信和可复现导出的共同产物。

路由

  • 定量图件:使用 Python(matplotlib/seaborn)或 R(ggplot2/patchwork/ComplexHeatmap)。
  • 机制图或图形摘要:先建立概念与关系清单,再使用矢量工具或可用的图像生成能力制作草案;不得用 AI 图替代定量证据。
  • 已有图件审查:同时检查图源代码、最终导出和最终版面尺寸,不能只看屏幕截图。

优先服从用户现有语言与项目栈。用户未指定且不存在项目约束时,默认使用 Python,并在交付中说明;只有选择会显著影响复现或协作时才询问。

图件契约

绘图前写出:

  1. Conclusion:读者看完图后应能复述的一句话。
  2. Evidence hierarchy:主证据、支持证据、对照与边界。
  3. Panel map:每个面板的任务、数据和与其他面板的关系。
  4. Data contract:变量、单位、独立样本、缺失、排除和变换规则。
  5. Statistics contract:估计量、误差、检验、校正、n 与配对/重复结构。
  6. Export contract:栏宽、目标尺寸、字体、矢量/栅格、分辨率和 source data。

详细模板读取 references/figure-contract.md

执行流程

  1. 审计数据。 保留输入行数、排除规则、变换和聚合前后计数;不得静默删除异常或缺失值。
  2. 选择图形。 根据科学问题、变量类型和实验层级选图,不按“看起来像顶刊”选图。读取 references/chart-selection.md
  3. 规划版面。 先安排主面板与阅读顺序,再写绘图代码;面板数量服务论证,不追求填满页面。
  4. 编码与导出。 固定随机种子、字体、尺寸、颜色、排序和导出参数;保留可运行源码。
  5. 写图注。 说明样本、n、中心量、误差、检验、校正、符号和缩写,使图注可独立理解。
  6. 自动预检。 执行 python scripts/figure_preflight.py <source.py|source.R> --artifact <figure.svg> ...
  7. 视觉核验。 在最终印刷尺寸检查标签、图例、线宽、遮挡、色盲可辨识、面板一致性和缩放后的栅格清晰度。
  8. 交付溯源包。 提供源码、导出文件、source data、参数说明、排除记录和剩余风险。

视觉与导出标准读取 references/visual-standards.md

默认交付

Figure contract
- Conclusion:
- Evidence hierarchy:
- Panel map:
- Data/statistics contract:
- Export contract:

Artifacts
- source:
- vector:
- raster:
- source data:

Integrity log
- input rows:
- exclusions:
- transformations:
- output rows:

Preflight and visual QA
- passed:
- warnings:
- author checks:

质量门槛

  • 图形类型与数据结构、实验单位和统计推断一致。
  • 主图尽量展示观测分布或个体点,而非只显示柱高与星号。
  • 颜色不作为唯一编码;使用色盲可辨且语义稳定的配色。
  • 面板标签、字体、线宽、单位和小数精度一致。
  • 矢量文本保持可编辑;照片或显微图按目标尺寸满足分辨率要求。
  • 所有排除、平滑、截断、归一化和聚合均可追溯。
  • 图注与正文使用相同 n、检验、误差和比较方向。
  • 机制示意图明确区分已证实关系、推测路径和视觉隐喻。

资料路由

任务 读取
结论、证据层级、面板、数据与导出契约 references/figure-contract.md
按变量和科学问题选择图形 references/chart-selection.md
字体、颜色、尺寸、矢量/栅格、图注和最终 QA references/visual-standards.md

Read the full file on GitHub · 90 lines

Files

What ships with it

5 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 90 lines · 164 tokens per session scan A fc629ded3102

Subscribe to this mod's changes

qinyan-nature-figures is a skill published in the GitHub repository LeonChaoX/qinyan-academic-skills (884 stars, last pushed 1mo ago), licensed MIT. It adds 164 tokens to every session and 1,253 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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