scientific-critical-thinking

scientific-critical-thinking is a skill for Claude Code from LeonChaoX/qinyan-academic-skills. It costs 63 tokens per session (4,779 once invoked), scanned A, a copy of scientific-critical-thinking, MIT.

A method for judging how trustworthy scientific claims are by examining study design, statistics, bias, confounding factors, and the evidence supporting the conclusions.

In plain words
What is it for?
Use it to assess research papers, review experimental methods, grade evidence, identify sources of bias, and support systematic reviews or meta-analyses.
Why use it?
It helps reveal weaknesses in experiments or research summaries before accepting their findings.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter.

Needs its repository: it runs a file that does not travel with it, so clone the repository first. The line is python scripts/generate_schematic.py "your diagram description" -o figures/output.png.

Good fit Use it to assess research papers, review experimental methods, grade evidence, identify sources of bias, and support systematic reviews or meta-analyses.

Compare 6 skills from other repositories ↓
Install

Getting it into your agent

It runs from inside its repository, so the clone comes first — what it calls does not travel with the file alone.

Clone the repo
git clone --depth 1 https://github.com/LeonChaoX/qinyan-academic-skills
agentmods
npx agentmods add skills/leonchaox/qinyan-academic-skills/scientific-critical-thinking

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for scientific-critical-thinking

README.md
[![agentmods](https://agentmods.dev/badge/skills/leonchaox/qinyan-academic-skills/scientific-critical-thinking/github.svg)](https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/scientific-critical-thinking)
Your own site
<a href="https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/scientific-critical-thinking"><img src="https://agentmods.dev/badge/skills/leonchaox/qinyan-academic-skills/scientific-critical-thinking/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for scientific-critical-thinking

Your own site · 80×15
<a href="https://agentmods.dev/skills/leonchaox/qinyan-academic-skills/scientific-critical-thinking"><img src="https://agentmods.dev/badge/skills/leonchaox/qinyan-academic-skills/scientific-critical-thinking.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 63 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 4,779 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin 92% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00063 $0.04779
Opus 5 $0.00032 $0.02389
Sonnet 5 $0.00013 $0.00956
Haiku 4.5 $0.00006 $0.00478

Measured 13d ago against content hash 0db52bacb62e, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

scientific-critical-thinking scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 13d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

92% identical to scientific-critical-thinking — 47 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

skills/04-研究方法与科学思维/scientific-critical-thinking/SKILL.md · 571 lines

How it starts

The opening of the file, as written. The whole thing — 571 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Scientific Critical Thinking

Overview

Critical thinking is a systematic process for evaluating scientific rigor. Assess methodology, experimental design, statistical validity, biases, confounding, and evidence quality using GRADE and Cochrane ROB frameworks. Apply this skill for critical analysis of scientific claims.

When to Use This Skill

This skill should be used when:

  • Evaluating research methodology and experimental design
  • Assessing statistical validity and evidence quality
  • Identifying biases and confounding in studies
  • Reviewing scientific claims and conclusions
  • Conducting systematic reviews or meta-analyses
  • Applying GRADE or Cochrane risk of bias assessments
  • Providing critical analysis of research papers

Visual Enhancement with Scientific Schematics

When creating documents with this skill, always consider adding scientific diagrams and schematics to enhance visual communication.

If your document does not already contain schematics or diagrams:

  • Use the scientific-schematics skill to generate AI-powered publication-quality diagrams
  • Simply describe your desired diagram in natural language
  • Nano Banana Pro will automatically generate, review, and refine the schematic

For new documents: Scientific schematics should be generated by default to visually represent key concepts, workflows, architectures, or relationships described in the text.

How to generate schematics:

python scripts/generate_schematic.py "your diagram description" -o figures/output.png

The AI will automatically:

  • Create publication-quality images with proper formatting
  • Review and refine through multiple iterations
  • Ensure accessibility (colorblind-friendly, high contrast)
  • Save outputs in the figures/ directory

When to add schematics:

  • Critical thinking framework diagrams
  • Bias identification decision trees
  • Evidence quality assessment flowcharts
  • GRADE assessment methodology diagrams
  • Risk of bias evaluation frameworks
  • Validity assessment visualizations
  • Any complex concept that benefits from visualization

Read the full file on GitHub · 571 lines

Files

What ships with it

6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 13d ago First seen · 571 lines · 63 tokens per session scan A 0db52bacb62e

Subscribe to this mod's changes

scientific-critical-thinking is a skill published in the GitHub repository LeonChaoX/qinyan-academic-skills (883 stars, last pushed 1mo ago), licensed MIT. It adds 63 tokens to every session and 4,779 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. It is 92% identical to scientific-critical-thinking, differing in 47 lines, and is treated as a copy.

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