A framework for discovering, compiling, and validating reusable skills for scientific agents.
Skill Claude CodeCodex
Use this starter when a task lands in the Comparative genomics frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this skill to resolve a gene symbol to Ensembl IDs and fetch a canonical Ensembl gene record. Do not use it for full transcript annotation pipelines or offline work.
Skill Claude CodeCodex
Use this skill to run a deterministic read-QC pass with FastQC and aggregate the result with MultiQC on a tiny FASTQ example.
Skill Claude CodeCodex
Use this starter when a task lands in the Fine mapping frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Germline pipelines frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this skill to run a deterministic local pass over GWAS summary statistics, flag common QC issues, and emit a compact interpretation plan for downstream clumping, heritability, and functional follow-up.
Skill Claude CodeCodex
Use this starter when a task lands in the Long-read genomics frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex needs its repo
Use this skill to align a tiny FASTQ file against a small reference with minimap2, sort and index the resulting BAM, and summarize the alignments.
Skill Claude CodeCodex
Use this skill to search NCBI Gene by symbol and organism, then fetch compact official Entrez Gene summaries. Do not use it for variant interpretation, transcript-level modeling, or bulk offline annotation.
Skill Claude CodeCodex
Use this starter when a task lands in the Phylogenomics frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Polygenic risk scoring frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this skill to read a small SAM, BAM, or CRAM file with pysam, summarize core alignment statistics, and optionally emit an indexed BAM artifact for downstream debugging or demos.
Skill Claude CodeCodex
Use this starter when a task lands in the Quantification frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Somatic pipelines frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this skill to compute deterministic MinHash signatures for two tiny DNA sequences with sourmash and summarize their similarity in compact JSON.
Skill Claude CodeCodex
Use this starter when a task lands in the Variant calling frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Cluster-safe installs frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the CPU / memory tuning frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the GPU jobs frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the I/O-aware workflows frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Interactive debug workflows frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Multi-node jobs frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Scratch-space usage frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this skill to submit a tiny real Slurm job array, wait for terminal accounting, and summarize per-task outputs in compact JSON.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: