A framework for discovering, compiling, and validating reusable skills for scientific agents.
Skill Claude CodeCodex
Use this skill to verify the repo-managed nf-core tools install and retrieve a cleaned summary of available pipelines. Do not use it for interactive launch flows or full pipeline downloads.
Skill Claude CodeCodex needs its repo
Use this skill to execute a tiny parameterized notebook with Papermill and capture a deterministic summary plus the rendered output notebook.
Skill Claude CodeCodex
Use this skill to run a tiny Snakemake workflow through the repo-managed Snakemake prefix and inspect deterministic toy outputs.
Skill Claude CodeCodex
Use this skill to author and run a minimal WDL task and workflow with miniwdl. Do not use it for Cromwell-specific backends or large imported workflow graphs.
Skill Claude CodeCodex
Use this starter when a task lands in the WDL workflows frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Workflow interoperability and translation frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Active-learning experiment loops frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Automated microscopy acquisition frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex needs its repo
Use this skill to generate a deterministic Autoprotocol JSON plan for a small liquid-handling experiment and inspect a concise execution summary.
Skill Claude CodeCodex
Use this starter when a task lands in the Closed-loop optimization for experiments frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the ELN / LIMS / sample-tracking integration frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Laboratory robotics safety and monitoring frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this skill to generate a minimal Opentrons Protocol API transfer script and verify it through the local simulator.
Skill Claude CodeCodex needs its repo
Use this skill to run a tiny deterministic parameter sweep with QCoDeS, persist the measurements to a local dataset database, and summarize the recorded sweep.
Skill Claude CodeCodex
Use this starter when a task lands in the Code-generation agents for scientific tasks frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex needs its repo
Use this skill to run a deterministic Inspect evaluation harness over toy scientific-agent cases and compare a candidate solver against a weaker baseline.
Skill Claude CodeCodex
Use this skill to decompose a scientific task into deterministic step queries, route each step to candidate local skills, and return an execution-ready plan.
Skill Claude CodeCodex
Use this starter when a task lands in the Literature-to-hypothesis agents frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Long-horizon agent memory and provenance frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this skill to route a free-text scientific task query to the most relevant skills in the local registry.
Skill Claude CodeCodex
Use this starter when a task lands in the Tool-using analysis agents frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Workflow generation agents frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex
Use this starter when a task lands in the Automatic differentiation for scientific models frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.
Skill Claude CodeCodex needs its repo
Use this skill to run a deterministic uncertainty-propagation toy workflow with Chaospy and inspect a machine-readable summary of the propagated response distribution.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: