neurokit2

neurokit2 is a skill for Claude Code, Codex from magic3007/dotfiles. It costs 96 tokens per session (2,855 once invoked), scanned A, a copy of neurokit2, MIT.

A Python toolkit for processing biosignals, which are measurements of body activity such as heartbeats, brain waves, breathing, muscle activity, skin conductance, and eye movements.

In plain words
What is it for?
Analyzing ECG, PPG, EEG, EDA, breathing, EMG, and EOG data, including heart-rate measures, blink detection, muscle activity, and combining several signal types.
Why use it?
It provides common processing and analysis steps for physiological recordings in one toolkit.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Analyzing ECG, PPG, EEG, EDA, breathing, EMG, and EOG data, including heart-rate measures, blink detection, muscle activity, and combining several signal types.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/magic3007/dotfiles/neurokit2
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add magic3007/dotfiles --skill neurokit2
Clone the repo
git clone --depth 1 https://github.com/magic3007/dotfiles

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for neurokit2

README.md
[![agentmods](https://agentmods.dev/badge/skills/magic3007/dotfiles/neurokit2.svg)](https://agentmods.dev/skills/magic3007/dotfiles/neurokit2)
Your own site
<a href="https://agentmods.dev/skills/magic3007/dotfiles/neurokit2"><img src="https://agentmods.dev/badge/skills/magic3007/dotfiles/neurokit2.svg" alt="Measured on agentmods" height="20"></a>
Per session 96 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,855 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin 98% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00096 $0.02855
Opus 5 $0.00048 $0.01427
Sonnet 5 $0.00019 $0.00571
Haiku 4.5 $0.00010 $0.00285

Measured 4d ago against content hash 4ee41e9b665d, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-07, from the pricing page.

Security

Grade A, and why

neurokit2 scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

98% identical to neurokit2 — 4 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

claude/skills/scientific-agent-skills/skills/neurokit2/SKILL.md · 356 lines

How it starts

The opening of the file, as written. The whole thing — 356 lines — stays where its author put it; the contents beside it link to each section on GitHub.

NeuroKit2

Overview

NeuroKit2 is a comprehensive Python toolkit for processing and analyzing physiological signals (biosignals). Use this skill to process cardiovascular, neural, autonomic, respiratory, and muscular signals for psychophysiology research, clinical applications, and human-computer interaction studies.

When to Use This Skill

Apply this skill when working with:

  • Cardiac signals: ECG, PPG, heart rate variability (HRV), pulse analysis
  • Brain signals: EEG frequency bands, microstates, complexity, source localization
  • Autonomic signals: Electrodermal activity (EDA/GSR), skin conductance responses (SCR)
  • Respiratory signals: Breathing rate, respiratory variability (RRV), volume per time
  • Muscular signals: EMG amplitude, muscle activation detection
  • Eye tracking: EOG, blink detection and analysis
  • Multi-modal integration: Processing multiple physiological signals simultaneously
  • Complexity analysis: Entropy measures, fractal dimensions, nonlinear dynamics

Core Capabilities

1. Cardiac Signal Processing (ECG/PPG)

Process electrocardiogram and photoplethysmography signals for cardiovascular analysis. See references/ecg_cardiac.md for detailed workflows.

Primary workflows:

  • ECG processing pipeline: cleaning → R-peak detection → delineation → quality assessment
  • HRV analysis across time, frequency, and nonlinear domains
  • PPG pulse analysis and quality assessment
  • ECG-derived respiration extraction

Key functions:

import neurokit2 as nk

# Complete ECG processing pipeline
signals, info = nk.ecg_process(ecg_signal, sampling_rate=1000)

# Analyze ECG data (event-related or interval-related)
analysis = nk.ecg_analyze(signals, sampling_rate=1000)

# Comprehensive HRV analysis
hrv = nk.hrv(peaks, sampling_rate=1000)  # Time, frequency, nonlinear domains

2. Heart Rate Variability Analysis

Compute comprehensive HRV metrics from cardiac signals. See references/hrv.md for all indices and domain-specific analysis.

Read the full file on GitHub · 356 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago First seen · 356 lines · 96 tokens per session scan A 4ee41e9b665d

Subscribe to this mod's changes

neurokit2 is a skill published in the GitHub repository magic3007/dotfiles (11 stars, last pushed today), licensed MIT. It adds 96 tokens to every session and 2,855 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. It is 98% identical to neurokit2, differing in 4 lines, and is treated as a copy.

Related

Other skills, from other repositories

scaffold-python

Scaffold a complete Python project with CI/CD, release pipeline, justfile, sr.yaml, pyproject.toml, .envrc, and standard files. Uses uv, ruff, and justfile (Python lacks a native task runner like pnpm scripts, so just fills that gap). Loads on top of scaffold-project (run that first for cross-language standard files).…

urmzd/dotfiles · 135 tokens

scaffold-go

Scaffold a complete Go project with CI/CD, release pipeline, Makefile, sr.yaml, .envrc, and standard files. Uses go toolchain and make as the native build system. Loads on top of scaffold-project (run that first for cross-language standard files). Use when creating a new Go CLI, service, or module, or when the user…

urmzd/dotfiles · 116 tokens

scaffold-node

Scaffold a complete Node/TypeScript project with CI/CD, release pipeline, sr.yaml, .envrc, and standard files. Uses pnpm and biome. Loads on top of scaffold-project (run that first for cross-language standard files). Use when creating a new Node.js app, TypeScript library, or website, or when the user mentions "new…

urmzd/dotfiles · 119 tokens

write-code

Operational tech-stack picks and coding patterns: error handling per language, commit conventions, interface design (Go SDKs), workspace layout, junior-friendly bias. Use when writing or reviewing implementation code and you need a concrete answer for "what tool, pattern, or idiom." Do NOT use for design-tradeoff…

urmzd/dotfiles · 112 tokens

scaffold-rust

Scaffold a complete Rust project with CI/CD, release pipeline, and sr.yaml. Uses cargo as the native build system. Loads on top of scaffold-project (run that first for cross-language standard files). Use when creating a new Rust CLI, library, or workspace, or when the user mentions "new Rust project", "cargo init", or…

urmzd/dotfiles · 102 tokens

assess-quality

Foundational quality framework: the five questions (readable, easy to start, expands without bloat, consistent, intentional) every other dev skill is judged against, plus the dual-audience and workshop principles. Use when onboarding to a project, defining a quality bar, setting an assessment checklist, or arbitrating…

urmzd/dotfiles · 120 tokens