alphafold-database

alphafold-database is a skill for Claude Code, Codex from MarieLynneBlock/arcanum-artifex. It costs 54 tokens per session (4,024 once invoked), scanned A, original, no licence file.

A connection to the AlphaFold Database, which stores AI-predicted 3D shapes for more than 200 million proteins. It retrieves structures by UniProt ID and provides PDB or mmCIF files with confidence measures such as pLDDT and PAE.

In plain words
What is it for?
Retrieving protein structures for drug discovery and structural biology, then reviewing their predicted quality.
Why use it?
It avoids manually searching and downloading protein structure data from a large scientific database. It also makes model-confidence information available alongside each structure.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Retrieving protein structures for drug discovery and structural biology, then reviewing their predicted quality.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/marielynneblock/arcanum-artifex/alphafold-database
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add MarieLynneBlock/arcanum-artifex --skill alphafold-database
Clone the repo
git clone --depth 1 https://github.com/MarieLynneBlock/arcanum-artifex

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for alphafold-database

README.md
[![agentmods](https://agentmods.dev/badge/skills/marielynneblock/arcanum-artifex/alphafold-database/github.svg)](https://agentmods.dev/skills/marielynneblock/arcanum-artifex/alphafold-database)
Your own site
<a href="https://agentmods.dev/skills/marielynneblock/arcanum-artifex/alphafold-database"><img src="https://agentmods.dev/badge/skills/marielynneblock/arcanum-artifex/alphafold-database/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for alphafold-database

Your own site · 80×15
<a href="https://agentmods.dev/skills/marielynneblock/arcanum-artifex/alphafold-database"><img src="https://agentmods.dev/badge/skills/marielynneblock/arcanum-artifex/alphafold-database.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 54 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 4,024 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 2 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00054 $0.04024
Opus 5 $0.00027 $0.02012
Sonnet 5 $0.00011 $0.00805
Haiku 4.5 $0.00005 $0.00402

Measured 9d ago against content hash c6183a7835a9, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

alphafold-database scanned grade A with 2 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

response = requests.get(api_url)

Runs shell commandslowCapability

Expected in a hook, worth knowing in a rule or an instructions file.

> ⚠️ **Security Note**: The example below uses `shell=True` for simplicity. In production environments, prefer using `subprocess.run()` with a list of arguments to prevent command injection vulnerabilities. See [Python s
skills/scientific/alphafold-database/SKILL.md · 511 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 511 lines · 54 tokens per session scan A c6183a7835a9

Subscribe to this mod's changes

alphafold-database is a skill published in the GitHub repository MarieLynneBlock/arcanum-artifex (4 stars, last pushed 7d ago), with no licence file. It adds 54 tokens to every session and 4,024 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 2 findings (makes network calls, runs shell commands). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.