dnanexus-integration

dnanexus-integration is a skill for Claude Code, Codex from MarieLynneBlock/arcanum-artifex. It costs 49 tokens per session (2,413 once invoked), scanned A, original, no licence file.

An integration with DNAnexus, a cloud platform for storing genomic data and running genomics workflows. It uses the Python dxpy toolkit and works with files such as FASTQ, BAM, and VCF.

In plain words
What is it for?
Use it to build DNAnexus apps, upload or download sequencing data, and run genomics workflows in the cloud.
Why use it?
It helps move genomic data and pipeline jobs between code and the DNAnexus platform.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it to build DNAnexus apps, upload or download sequencing data, and run genomics workflows in the cloud.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/marielynneblock/arcanum-artifex/dnanexus-integration
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add MarieLynneBlock/arcanum-artifex --skill dnanexus-integration
Clone the repo
git clone --depth 1 https://github.com/MarieLynneBlock/arcanum-artifex

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for dnanexus-integration

README.md
[![agentmods](https://agentmods.dev/badge/skills/marielynneblock/arcanum-artifex/dnanexus-integration/github.svg)](https://agentmods.dev/skills/marielynneblock/arcanum-artifex/dnanexus-integration)
Your own site
<a href="https://agentmods.dev/skills/marielynneblock/arcanum-artifex/dnanexus-integration"><img src="https://agentmods.dev/badge/skills/marielynneblock/arcanum-artifex/dnanexus-integration/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for dnanexus-integration

Your own site · 80×15
<a href="https://agentmods.dev/skills/marielynneblock/arcanum-artifex/dnanexus-integration"><img src="https://agentmods.dev/badge/skills/marielynneblock/arcanum-artifex/dnanexus-integration.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 49 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,413 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00049 $0.02413
Opus 5 $0.00024 $0.01207
Sonnet 5 $0.00010 $0.00483
Haiku 4.5 $0.00005 $0.00241

Measured 8d ago against content hash fa3bc45c7224, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

dnanexus-integration scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Runs shell commandslowCapability

Expected in a hook, worth knowing in a rule or an instructions file.

subprocess.check_call([
skills/scientific/dnanexus-integration/SKILL.md · 381 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

5 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 8d ago First seen · 381 lines · 49 tokens per session scan A fa3bc45c7224

Subscribe to this mod's changes

dnanexus-integration is a skill published in the GitHub repository MarieLynneBlock/arcanum-artifex (4 stars, last pushed 6d ago), with no licence file. It adds 49 tokens to every session and 2,413 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 1 finding (runs shell commands). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

Related

Other skills, from other repositories

medical-agent

Build medical AI agents for clinical decision support, medical record summarization, diagnostic assistance, and healthcare workflow automation.

a5c-ai/babysitter · 25 tokens

azure-bicep-patterns

UTILITY SKILL — Reusable Azure Bicep patterns: hub-spoke, private endpoints, diagnostics, AVM composition. WHEN: "hub-spoke Bicep", "private endpoint module", "diagnostic settings", "AVM Bicep composition". USE FOR: Bicep template design, hub-spoke networking, private endpoint patterns, AVM modules. DO NOT USE FOR…

jonathan-vella/apex-accelerator · 114 tokens

azure-governance-discovery

ANALYSIS SKILL — Azure Policy discovery: effective assignments (incl. MG-inherited), definitions/exemptions, effect classification, emits governance-constraints JSON. WHEN: 'Azure policy discovery', 'effective policy assignments', 'governance constraints', '04g-Governance Phase 1', 'refresh governance JSON'. DO NOT…

jonathan-vella/apex-accelerator · 86 tokens

azure-storage

UTILITY SKILL — Azure Storage Services: Blob, File Shares, Queue, Table, and Data Lake. Object storage, SMB shares, async messaging, NoSQL key-value, big-data analytics. Access tiers + lifecycle management. WHEN: "blob storage", "file shares", "queue storage", "table storage", "data lake", "access tiers", "lifecycle…

jonathan-vella/apex-accelerator · 105 tokens

azure-defaults

UTILITY SKILL — Applies canonical Azure defaults through an IaC workflow covering governance precedence, CAF naming, AVM-first composition, unique suffixes, cost monitoring, VNet planning, and lifecycle checks. WHEN: "Azure naming convention", "CAF naming", "resource tags", "AVM module", "security baseline", "region…

jonathan-vella/apex-accelerator · 86 tokens

azure-compute

ANALYSIS SKILL — Recommend Azure VM sizes and VMSS for workload, performance, and budget. Uses public docs and the Azure Retail Prices API. WHEN: "recommend VM size", "choose Azure VM", "GPU VM", "compare VM sizes", "VMSS vs VM", "autoscale VMs". DO NOT USE FOR: provisioning VMs (azure-prepare), VM pricing for budgets…

jonathan-vella/apex-accelerator · 91 tokens