marin: Skill for Codex

.agents/skills/research-engineering/SKILL.md

research-engineering is a skill for Codex from marin-community/marin. It costs 49 tokens per session (639 once invoked), scanned A, original, Apache-2.0.

A research-engineering workflow for exploring Marin designs, datasets, and experimental pipelines. It preserves experiments in a runnable branch and notebook before selected code is moved into pull requests.

In plain words
What is it for?
Comparing implementation options, analyzing data or artifacts, running experiments, recording results, and promoting chosen work into Marin pull requests.
Why use it?
It keeps exploratory work reproducible and separate from production changes. It also provides a record of decisions, experiments, and the conditions for stopping.

Skill for Codex

Written for Codex: agents/openai.yaml present. Also seen: installed under .agents/ (shared by several agents); mentions AGENTS.md.

This is marin-community/marin's own configuration. It tells Codex how to work on marin itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything marin configures →

About the project

Marin is an open-source research program, software platform, and community for developing foundation models such as large language models. Researchers use it for data preparation, tokenization, pretraining, posttraining, evaluation, and related experiments, including work on audio-text, DNA, and protein models. The catalogue entries are add-ons that support workflows around Marin.

marin-community/marin · 4,074 stars · on GitHub · marin.community

Reuse

Borrowing it

Nothing to install: this file belongs to marin-community/marin. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/marin-community/marin/main/.agents/skills/research-engineering/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/marin-community/marin

Made for: Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for research-engineering

README.md
[![agentmods](https://agentmods.dev/badge/skills/marin-community/marin/research-engineering/github.svg)](https://agentmods.dev/skills/marin-community/marin/research-engineering)
Your own site
<a href="https://agentmods.dev/skills/marin-community/marin/research-engineering"><img src="https://agentmods.dev/badge/skills/marin-community/marin/research-engineering/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for research-engineering

Your own site · 80×15
<a href="https://agentmods.dev/skills/marin-community/marin/research-engineering"><img src="https://agentmods.dev/badge/skills/marin-community/marin/research-engineering.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 49 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 639 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00049 $0.00639
Opus 5.5 $0.00020 $0.00256
Sonnet 5.5 $0.00010 $0.00128
Haiku 4.5 $0.00005 $0.00064

Measured 14d ago against content hash 9ac71f9efd97, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

research-engineering scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 14d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.agents/skills/research-engineering/SKILL.md · 54 lines

How it starts

The opening of the file, as written. The whole thing — 54 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Research engineering

Use this skill when answering a question requires exploring alternatives, analyzing data or artifacts, or iterating on experiments before choosing an implementation. Work can start before any run is launched. Background research alone follows experiment records.

Read the research engineering guide for the record, branch, and promotion workflow. Read the current marin-logbooks guidelines before creating or updating its branches; research branches inherit Marin's root instructions rather than the logbooks index branch's instructions.

Coordinate the work

  • Start from the decision, baseline, constraints, and useful stopping condition. Search prior work through use-echo and inspect the current checkout.
  • Use a task issue in marin-community/marin-logbooks as the public entry point. Reuse an existing issue; when the task authorizes a new public research program, use file-issue with target repository marin-community/marin-logbooks to create its coordinating issue. An existing Marin issue can link to it. Do not publish private work without authorization.
  • Work on a Marin-derived branch in logbooks. Preserve the notebook and supporting analysis alongside the actual experimental source changes.
  • Record why each meaningful alternative was tried, the evidence it produced, what was learned, and the next decision. Commit and push supporting code and notebook entries before a milestone issue update or handoff.
  • Keep the issue body current and its comments useful as a readable account of the important attempts, results, and changes of direction.
  • Extract selected code into Marin contribution branches. Use manage-pr for their validation, publication, and feedback; keep the research branch intact. A useful negative result can finish a program without a code PR.

Read the full file on GitHub · 54 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 14d ago First seen · 54 lines · 49 tokens per session scan A 9ac71f9efd97

Subscribe to this mod's changes

research-engineering is a skill published in the GitHub repository marin-community/marin (4,074 stars, last pushed today), licensed Apache-2.0. It adds 49 tokens to every session and 639 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-10-24.

Related

research-engineering compared with skills from other repositories

research-engineering next to 6 skills from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
research-engineeringmarin-community/marinSkill4.1ktodayApache-2.0A49Codex
instrument-data-to-allotropeanthropics/knowledge-work-pluginsSkill35k2d agoApache-2.0A123Claude Code
exploratory-data-analysisK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA83Claude Code
matlabK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA44Claude Code
phylogeneticsK-Dense-AI/scientific-agent-skillsSkill56k4d agoMITA71Claude Code, Codex
research-engineerdavila7/claude-code-templatesSkill33ktodayMITA43Claude Code, Codex
mapping-to-snomedmaziyarpanahi/openmedSkill5.8kyesterdayApache-2.0A205Claude Code