setup_commands

setup_commands is a skill for Claude Code from markmhendrickson/neotoma. It costs 8 tokens per session (343 once invoked), scanned A, a copy of setup-commands, MIT.

Legacy setup guidance for a project where older foundation workflows were replaced by skills. It explains where Cursor skills and Claude rules are installed and how to refresh them.

In plain words
What is it for?
Refreshing Cursor skills and Claude rules, loading workflows by trigger, and handling older repository command files when they are still configured.
Why use it?
It prevents developers from looking for workflows in directories that no longer contain them. It also clarifies which setup command copies the current files into the editors’ configuration folders.

Skill for Claude Code

Written for Claude Code: installed under .claude/. Also seen: reads .claude/ paths.

Good fit Refreshing Cursor skills and Claude rules, loading workflows by trigger, and handling older repository command files when they are still configured.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/markmhendrickson/neotoma/setup_commands
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add markmhendrickson/neotoma --skill setup_commands
Clone the repo
git clone --depth 1 https://github.com/markmhendrickson/neotoma

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for setup_commands

README.md
[![agentmods](https://agentmods.dev/badge/skills/markmhendrickson/neotoma/setup_commands/github.svg)](https://agentmods.dev/skills/markmhendrickson/neotoma/setup_commands)
Your own site
<a href="https://agentmods.dev/skills/markmhendrickson/neotoma/setup_commands"><img src="https://agentmods.dev/badge/skills/markmhendrickson/neotoma/setup_commands/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for setup_commands

Your own site · 80×15
<a href="https://agentmods.dev/skills/markmhendrickson/neotoma/setup_commands"><img src="https://agentmods.dev/badge/skills/markmhendrickson/neotoma/setup_commands.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 8 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 343 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin 92% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00008 $0.00343
Opus 5.5 $0.00003 $0.00137
Sonnet 5.5 $0.00002 $0.00069
Haiku 4.5 $0.00001 $0.00034

Measured 1mo ago against content hash e0d23ff5fde1, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

setup_commands scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

92% identical to setup-commands — 12 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

.claude/skills/setup_commands/SKILL.md · 28 lines

What it actually says

Setup Commands (Legacy)

Foundation workflows have been replaced by skills. There is no longer a foundation/agent_instructions/cursor_commands/ directory; workflows live in foundation/agent_instructions/cursor_skills/{slug}/SKILL.md.

What to do instead

  1. Use setup-cursor-copies — Run ./foundation/scriptsscripts/setup_claude_instructions.sh.sh (or the setup-cursor-copies skill). It copies foundation rules into .claude/rules/ and foundation skills into .cursor/skills/.
  2. Load skills by trigger — When a trigger matches (e.g. commit, pull, push, fix-feature-bug), load the corresponding skill from .cursor/skills/{slug}/SKILL.md per the router rule.

When this skill is invoked

  • Tell the user that foundation no longer installs into .claude/skills/.
  • Run or direct them to run setup-cursor-copies to refresh .claude/rules/ and .cursor/skills/.
  • Repository-specific command files in docs/*_command.md (if any) may still be installed by setup into .claude/skills/ when configured in the manifest; foundation workflows are only in .cursor/skills/.
  • setup-cursor-copies skill — Copies foundation rules and skills into .cursor/.
  • Foundation skills source: foundation/agent_instructions/cursor_skills/
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 28 lines · 8 tokens per session scan A e0d23ff5fde1

Subscribe to this mod's changes

setup_commands is a skill published in the GitHub repository markmhendrickson/neotoma (34 stars, last pushed today), licensed MIT. It adds 8 tokens to every session and 343 once invoked, about $0.0000 per session on Opus 5.5. A static security scan graded it A with 0 findings. It is 92% identical to setup-commands, differing in 12 lines, and is treated as a copy.

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