setup-commands

setup-commands is a skill for Claude Code, Codex from markmhendrickson/neotoma. It costs 9 tokens per session (396 once invoked), scanned A, original, MIT.

A legacy setup guide for older foundation workflows that used Claude Code skill files. It explains that current workflows use skills and Cursor copies instead.

In plain words
What is it for?
Use it to identify the old setup process and direct users to setup-cursor-copies, which refreshes .claude/rules/ and .cursor/skills/.
Why use it?
It prevents following an outdated setup path that no longer installs foundation files into the expected location.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/markmhendrickson/neotoma/setup-commands
Any agent
npx skills add markmhendrickson/neotoma --skill setup-commands
Clone the repo
git clone --depth 1 https://github.com/markmhendrickson/neotoma

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for setup-commands

README.md
[![agentmods](https://agentmods.dev/badge/skills/markmhendrickson/neotoma/setup-commands.svg)](https://agentmods.dev/skills/markmhendrickson/neotoma/setup-commands)
Your own site
<a href="https://agentmods.dev/skills/markmhendrickson/neotoma/setup-commands"><img src="https://agentmods.dev/badge/skills/markmhendrickson/neotoma/setup-commands.svg" alt="Measured on agentmods" height="20"></a>
Per session 9 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 396 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00009 $0.00396
Opus 5 $0.00005 $0.00198
Sonnet 5 $0.00002 $0.00079
Haiku 4.5 $0.00001 $0.00040

Measured 5d ago against content hash 9220a57cd5f2, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

setup-commands scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

Copies of this mod

2 near-identical copies found in the catalogue:

.claude/skills/setup-commands/SKILL.md · 36 lines

What it actually says


name: setup-commands description: Legacy setup for .claude/skills; foundation uses skills instead. Prefer setup-cursor-copies. triggers:

  • setup commands
  • /setup_commands
  • setup-commands

Setup Commands (Legacy)

Foundation workflows have been replaced by skills. There is no longer a foundation/agent_instructions/cursor_commands/ directory; workflows live in foundation/agent_instructions/cursor_skills/{slug}/SKILL.md.

What to do instead

  1. Use setup-cursor-copies — Run ./foundation/scriptsscripts/setup_claude_instructions.sh.sh (or the setup-cursor-copies skill). It copies foundation rules into .claude/rules/ and foundation skills into .cursor/skills/.
  2. Load skills by trigger — When a trigger matches (e.g. commit, pull, push, fix-feature-bug), load the corresponding skill from .cursor/skills/{slug}/SKILL.md per the router rule.

When this skill is invoked

  • Tell the user that foundation no longer installs into .claude/skills/.
  • Run or direct them to run setup-cursor-copies to refresh .claude/rules/ and .cursor/skills/.
  • Repository-specific command files in docs/*_command.md (if any) may still be installed by setup into .claude/skills/ when configured in the manifest; foundation workflows are only in .cursor/skills/.
  • setup-cursor-copies skill — Copies foundation rules and skills into .cursor/.
  • Foundation skills source: foundation/agent_instructions/cursor_skills/
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 36 lines · 9 tokens per session scan A 9220a57cd5f2

Subscribe to this mod's changes

setup-commands is a skill published in the GitHub repository markmhendrickson/neotoma (31 stars, last pushed 2d ago), licensed MIT. It adds 9 tokens to every session and 396 once invoked, about $0.0000 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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