Produce reviewable manuscript revision artifacts for LaTeX and DOCX, including patches, latexdiff output, tracked-change boundaries, comments, and human decision checklists. Use after evidence-bound edits have been planned and accepted.
Audit and enrich scientific manuscript methods using only real experiment records, scripts, logs, notebooks, metadata, instruments, software versions, data splits, seeds, and author notes. Use when method details must be made reproducible without fabricating parameters.
Orchestrate evidence-bound scientific manuscript revision across file mapping, claim-evidence mapping, structure, methods reproducibility, results consistency, and reviewable diff generation. Use when revising a scientific manuscript from LaTeX or DOCX together with experiment folders, figures, tables, logs…
Build a read-only inventory of manuscript files, figures, tables, notebooks, scripts, logs, raw and processed data, supplementary information, references, and author notes before scientific manuscript revision. Use when evidence sources must be discovered before editing a paper.
Audit consistency among manuscript text, numerical results, figures, tables, captions, supplementary information, code outputs, logs, and processed result files. Use before revising results, abstracts, captions, conclusions, or reviewer responses.
Reorganize scientific manuscript sections according to IMRaD, thesis, or target-journal structure while preserving evidence-bound claims, labels, citations, equations, and figure/table references. Use after claim and result audits have established what the evidence supports.
Scan experiment folders, notebooks, logs, metrics, and results directories to build a structured evidence ledger. Outputs evidenceledger.jsonl and figuretableinventory.md. Use as the first step before any evidence-bound revision.
Aggregate scattered experiment records from notebooks, logs, CSV metrics, and agent caches into a structured experimentallog.md. Inspired by PaperOrchestra's 4-phase aggregation pipeline. Use before claim-evidence-map to consolidate raw experiment evidence.
Auto-diagnose and fix common LaTeX compilation errors for the PKU thesis template including missing packages, font issues, citation undefined, overfull hboxes, and float placement. Use when xelatex fails or produces warnings.
Produce reviewable manuscript revision artifacts for LaTeX and DOCX, including patches, latexdiff output, tracked-change boundaries, comments, and human decision checklists. Use after evidence-bound edits have been planned and accepted.
Reorganize LaTeX file structure, fix label and cross-reference consistency, split oversized chapter files, and ensure clean \input/\include hierarchy. Use when the manuscript file organization needs cleanup before content revision.
Score manuscript quality on 6 axes with anti-inflation rules and halt conditions. Inspired by PaperOrchestra's autorater. Use after each revision round to track whether changes improve or degrade the manuscript.
Check materials science manuscripts for domain-specific notation conventions, unit consistency, IUPAC/ACS nomenclature, crystal structure notation, and figure/table caption style. Use before submission to catch domain style violations.
Audit and enrich scientific manuscript methods using only real experiment records, scripts, logs, notebooks, metadata, instruments, software versions, data splits, seeds, and author notes. Use when method details must be made reproducible without fabricating parameters.
Run a 5-perspective independent review of the manuscript covering editorial fit, methodology, domain expertise, cross-disciplinary impact, and adversarial argument testing. Inspired by academic-research-skills multi-reviewer approach. Use for pre-submission quality check or simulating peer review.
Compile LaTeX papers to PDF with XeLaTeX, automatic error detection, BibTeX reference resolution, and post-compile reporting. Adapted for PKU thesis template (ctexbook, COEmain.tex). Use when compiling, debugging LaTeX errors, or checking build status.
Verify that every VERIFIED claim in the claim-evidence matrix traces to real, existing evidence files. Detect broken evidence chains, circular references, and phantom evidence. Use after claim-evidence-map to validate the evidence binding.
Orchestrate evidence-bound scientific manuscript revision across file mapping, claim-evidence mapping, structure, methods reproducibility, results consistency, and reviewable diff generation. Use when revising a scientific manuscript from LaTeX or DOCX together with experiment folders, figures, tables, logs…
Validate PKU PhD thesis formatting against official requirements including margins, fonts, line spacing, paragraph indent, page headers/footers, and title hierarchy. Use before pre-submission review or after modifying setup/format files.
Build a read-only inventory of manuscript files, figures, tables, notebooks, scripts, logs, raw and processed data, supplementary information, references, and author notes before scientific manuscript revision. Use when evidence sources must be discovered before editing a paper.
Audit consistency among manuscript text, numerical results, figures, tables, captions, supplementary information, code outputs, logs, and processed result files. Use before revising results, abstracts, captions, conclusions, or reviewer responses.
Reorganize scientific manuscript sections according to IMRaD, thesis, or target-journal structure while preserving evidence-bound claims, labels, citations, equations, and figure/table references. Use after claim and result audits have established what the evidence supports.
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