codonfm-setup

codonfm-setup is a skill for Codex from NVIDIA-BioNeMo/bionemo-agent-toolkit. It costs 110 tokens per session (2,970 once invoked), scanned A, original, no licence file.

A setup tool for the public CodonFM v1 repository and its public Encodon model checkpoints. It can configure local data and checkpoint locations, prepare a development container, check GPU access, and download supported weights.

In plain words
What is it for?
Use it to build or launch the CodonFM container, configure mounts, verify a GPU, or download the supported Encodon checkpoints.
Why use it?
It provides the setup checks and files needed before running CodonFM development workflows.

Skill for Codex

Written for Codex: agents/openai.yaml present.

Good fit Use it to build or launch the CodonFM container, configure mounts, verify a GPU, or download the supported Encodon checkpoints.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill codonfm-setup
Clone the repo
git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit

Made for: Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for codonfm-setup

README.md
[![agentmods](https://agentmods.dev/badge/skills/nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup/github.svg)](https://agentmods.dev/skills/nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup)
Your own site
<a href="https://agentmods.dev/skills/nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup"><img src="https://agentmods.dev/badge/skills/nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for codonfm-setup

Your own site · 80×15
<a href="https://agentmods.dev/skills/nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup"><img src="https://agentmods.dev/badge/skills/nvidia-bionemo/bionemo-agent-toolkit/codonfm-setup.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 110 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,970 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00110 $0.02970
Opus 5.5 $0.00044 $0.01188
Sonnet 5.5 $0.00022 $0.00594
Haiku 4.5 $0.00011 $0.00297

Measured 8d ago against content hash 3fefcb9dd2c7, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

codonfm-setup scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

open-models-skills/codonfm/codonfm-setup/SKILL.md · 257 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Files

What ships with it

8 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 8d ago First seen · 257 lines · 110 tokens per session scan A 3fefcb9dd2c7

Subscribe to this mod's changes

codonfm-setup is a skill published in the GitHub repository NVIDIA-BioNeMo/bionemo-agent-toolkit (484 stars, last pushed 2d ago), with no licence file. It adds 110 tokens to every session and 2,970 once invoked, about $0.0004 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-10-10.

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