complexa-setup

A setup and configuration workflow for Proteina-Complexa, including installing its model weights. Model weights are the learned files a model needs to run.

In plain words
What is it for?
Use it to install Complexa, configure its environment file, download models, or check the current installation.
Why use it?
It handles the first-time environment checks and shows or configures which model files are installed, reducing setup errors before running design workflows.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/nvidia-bionemo/bionemo-agent-toolkit/complexa-setup
Any agent
npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-setup
Clone the repo
git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit

Made for: Claude Code, Codex.

Per session 208 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 3,651 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. Scan, not verified.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00208 $0.03651
Opus 5 $0.00104 $0.01826
Sonnet 5 $0.00042 $0.00730
Haiku 4.5 $0.00021 $0.00365

Measured 3d ago against content hash d33d13b8dbce, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

complexa-setup scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

wget loop is a recipe for partial downloads and wrong destination paths.
open-models-skills/proteina-complexa/complexa-setup/SKILL.md · 289 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

4 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 3d ago First seen · 289 lines · 208 tokens per session scan A d33d13b8dbce

Subscribe to this mod's changes

complexa-setup is a skill published in the GitHub repository NVIDIA-BioNeMo/bionemo-agent-toolkit (444 stars, last pushed 6d ago), with no licence file. It adds 208 tokens to every session and 3,651 once invoked, about $0.0010 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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